View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_high_7 (Length: 501)
Name: NF2562_high_7
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 38413911 - 38414395
Alignment:
| Q |
1 |
atcggtcatagataagttattcaaaactgcatttctcataatctatgaagagagaatgagttcttttacaacacaacaacttgggaaataaatcaaacta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38413911 |
atcggtcatagataagttattcaaaactgcatttctcataatctatgaagagagaatgagttcttttacaacacaacaacttgggaaataaatcaaacta |
38414010 |
T |
|
| Q |
101 |
aggaaagagatagtctactatttcaaggcaaggcctctcccttagaagaattcgagagcttggtctaatggtctctcgtaatcaataactgaattttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38414011 |
aggaaagagatagtctactatttcaaggcaaggcctctcccttagaagaattcgagagcttggtctaatggtctctcgtaatcaataactgaattttcat |
38414110 |
T |
|
| Q |
201 |
atctttttaaaatctgtctcataacgtatctgttggttgttggtctaagagtttgctgcctccaaacaattaaattaaatataatgtaatgaaactttga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38414111 |
atctttttaaaatctgtctcataacgtatctgttggttgttggtctaagagtttgctgcctccaaacaattaaattaaatatgatgtaatgaaactttga |
38414210 |
T |
|
| Q |
301 |
ggtcacaagccaagatcaaccttaaataaacttagtagagatataagtgtacttgatcaatccagttttaacttcacagcaccataacattaacaatgca |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38414211 |
ggtcacaagccaagatcaa-cttaaataaacttagtagagatataagtgtacttgatcaatccagttttaacttcacagcaccataacattaacaatgca |
38414309 |
T |
|
| Q |
401 |
ggtggtcacaatcaaagttgagatatatgtgtaactgacaaattaagtttcaacattttggtgtgaatgaatgaatagaagagagt |
486 |
Q |
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| T |
38414310 |
ggtggtcacagtcaaggttgagatatatgtgtaactgacaaattaagtttcaacattttggtgtgaatgaatgaatagaagagagt |
38414395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 454
Target Start/End: Original strand, 9376239 - 9376377
Alignment:
| Q |
303 |
tcacaagccaagatcaaccttaaataaacttagtagagatataagtgtacttgatcaatccagttttaacttcacagcaccataacattaacaatgcagg |
402 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||| |||||||| ||||| ||| ||||| |||||||||||||| |||| ||||||| |
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| T |
9376239 |
tcacaagccaagatcaaccttaagtaaacttaattgagacgtaagtgtaattgatgaattgagtttaaacttcacagcacc------ctaaccatgcagg |
9376332 |
T |
|
| Q |
403 |
tggtcacaatcaaagttgagatatatgtgtaactgacaaattaagtttcaac |
454 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
9376333 |
tggt-------taagttcagatatatgtgtaactgaccaattaagtttcaac |
9376377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 9339707 - 9339793
Alignment:
| Q |
303 |
tcacaagccaagatcaaccttaaataaacttagtagagatataagtgtacttgatcaatccagttttaacttcacagcaccataaca |
389 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || | ||||||||| |||| || ||||| |||||||||||||||||||| |
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|
| T |
9339707 |
tcacaagccaagatcaaccttaagtaaacttaattgatacataagtgtaactgatgaactgagtttgaacttcacagcaccataaca |
9339793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 7040630 - 7040755
Alignment:
| Q |
264 |
aaacaattaaattaaatataatgtaatgaaactttgaggtcacaagccaagatcaaccttaaataaacttagtagagatataagtgtacttgatcaatcc |
363 |
Q |
| |
|
|||||||||||| |||||| || | |||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||| ||||||||| | |
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| T |
7040630 |
aaacaattaaatataatatattgaatcgaaacttttaaatcacaagccaagatcaaacttaagtaaactcgtctgagatataagtgtaattgatcaatgc |
7040729 |
T |
|
| Q |
364 |
agttttaacttcacagcaccataaca |
389 |
Q |
| |
|
||||| |||||||||||||||||||| |
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|
| T |
7040730 |
agtttaaacttcacagcaccataaca |
7040755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 7032835 - 7032884
Alignment:
| Q |
39 |
taatctatgaagagagaatgagttcttttacaacacaacaacttgggaaa |
88 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
7032835 |
taatctatgaacagagaatgagttgttttacaacacaaaaacttaggaaa |
7032884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 9160375 - 9160344
Alignment:
| Q |
3 |
cggtcatagataagttattcaaaactgcattt |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
9160375 |
cggtcatagataagttattcaaaactgcattt |
9160344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 7033076 - 7033129
Alignment:
| Q |
292 |
aaactttgaggtcacaagccaagatcaaccttaaataaacttagtagagatataa |
346 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
7033076 |
aaacttttaagtcacaagccaagatcaactttaaataaactt-gttgagatataa |
7033129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 7044430 - 7044459
Alignment:
| Q |
4 |
ggtcatagataagttattcaaaactgcatt |
33 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7044430 |
ggtcatagataagttattcaaaactgcatt |
7044459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 387
Target Start/End: Original strand, 33540968 - 33541081
Alignment:
| Q |
273 |
aattaaatataatgtaatgaaactttgaggtcacaagccaagatcaaccttaaataaacttagtagagatataagtgtacttgatcaatccagttttaac |
372 |
Q |
| |
|
||||||||||||| || ||||||| | | |||| ||||| |||||| || | |||||||||| |||||||||||||| |||| ||| ||||| ||| |
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| T |
33540968 |
aattaaatataatatattgaaactgtaaattcaccagccaggatcaagattcagtaaacttagttgagatataagtgtaactgatgaat-aagtttcaac |
33541066 |
T |
|
| Q |
373 |
ttcacagcaccataa |
387 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
33541067 |
tttacagcaccataa |
33541081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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