View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_1 (Length: 960)
Name: NF2562_low_1
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 808; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 28 - 960
Target Start/End: Original strand, 13902467 - 13903399
Alignment:
| Q |
28 |
ctaaagatattcagggatgcaacaatgtcaaatcacttgtaaaactacacactacaatnnnnnnnnnnnnnnnnnnttcaagagataaatttcaagtaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
13902467 |
ctaaagatattcagggatgcaacaatgtcaaatcacttgtaaaactacacactacaataaaaaattaaaattaaaattcaagagataaatttcaaggaaa |
13902566 |
T |
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| Q |
128 |
ttgctacttgtaacgagagaaagccccacgacaatatcacgagacaattactaaatactatctctcataaactaaccccacttgccccgtgttttcccgc |
227 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13902567 |
ttgctacttgtcacgagagaaagccccacgacaatatcacgagacaattactaaatactatctctcataaactaaccccacttgccccgtgttttcccgc |
13902666 |
T |
|
| Q |
228 |
cagcggcaactttcttgccccgtgtttcccggccagcagcaaatttctttggcnnnnnnnnnnnnngcattctgagaccactttgtgaaaatatctctcg |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13902667 |
cagcggcaactttcttgccccgtgtttcccggccagcagcaaatttctttggctatatatatatatgcattctgagaccactttgtgaaaatatctctcg |
13902766 |
T |
|
| Q |
328 |
ggatacatagcattactcaaatttcaacaacaaacacatacacaaaacactaaggatatgtttctaataataacctaagtgtcataaaatcctatatgat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
13902767 |
ggatacatagcattactcaaatttcaacaacaaacacatacacaaaacactaagaatatgtttctgataataacctaagtgtcataaaatgctatatgat |
13902866 |
T |
|
| Q |
428 |
catcgttcattcatgttattcattcaattctttaaaattctcaaatatataccaaaatatagagttagacctccaaaacccttaatccagaataccctaa |
527 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13902867 |
catcattcattcatgttattcattcaattctttaaaattctcaaatatataccaaaatatagagttagacctccaaaacccttaatccagaataccctaa |
13902966 |
T |
|
| Q |
528 |
ttttccattatctccccttaaaaagcttcaaaatttctatgttcctaacctaatggtaccacacccattaatcaatttcaaacaaaccacatgcataaca |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13902967 |
ttttccattatctccccttaaaaagcttcaaaatttctatgttcctaacctaatggtaccacacccattaatcaatttcaaacaaaccacatgcataaca |
13903066 |
T |
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| Q |
628 |
taaaaaagaagctattttcaattcaaaaacttcaaaattagaatcaagaaacaaaccagtatctaacagctttgcagcgagcacaacgcatggtggtagg |
727 |
Q |
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| T |
13903067 |
taaaaaagaagctattttcaattcaaaaacttcaaaattagaatcaagaaacaaaccagtatctaacagctttgcagcgagcacaacgcatggtggtagg |
13903166 |
T |
|
| Q |
728 |
agaataacaaacagcacattgatacccatgagaaaatgaaactgaattggatgattcaaaagaagctgaatttgaaggtgaaaatgaaatttcatccgaa |
827 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13903167 |
agaataacaaacagcacattgatacccatgagaaaatgaaactgaattggatgattcaaaagaagctgaatttgaaggtgaaaatgaaatttcatctgaa |
13903266 |
T |
|
| Q |
828 |
tcggaataagcttccatatgagtcatagaagcagtagtatcttgtaccaacctcataacctcttctctcttctcttcagcatttctccaaacataacgaa |
927 |
Q |
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| T |
13903267 |
tcagaataagcttccatatgagtcatagaagcagtagtatcttgtaccaacctcataacctcttctctcttctcttcagcatttctccaaacataacgaa |
13903366 |
T |
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| Q |
928 |
tcaccacaaaacccaaaactaacagcaaataaa |
960 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13903367 |
tcaccacaaaacccaaaactaacagcaaataaa |
13903399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 29814383 - 29814333
Alignment:
| Q |
438 |
tcatgttattcattcaattctttaaaattctcaaatatataccaaaatatag |
489 |
Q |
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| T |
29814383 |
tcatgttattcgttcaattttttaaaat-ctcaaatatatactaaaatatag |
29814333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 516
Target Start/End: Original strand, 48663116 - 48663194
Alignment:
| Q |
438 |
tcatgttattcattcaa-ttctttaaaattctcaaatatataccaaaatatagagttagacctccaaaacccttaatcca |
516 |
Q |
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||||||||||| ||||| |||||||||| |||||||||| ||||||| ||||| |||| ||| ||||||||| |||||| |
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| T |
48663116 |
tcatgttattctttcaatttctttaaaa-cctcaaatatagaccaaaaaatagatttagcccttcaaaaccctcaatcca |
48663194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 516
Target Start/End: Original strand, 28297420 - 28297483
Alignment:
| Q |
453 |
aattctttaaaattctcaaatatataccaaaatatagagttagacctccaaaacccttaatcca |
516 |
Q |
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||||||| ||| |||||||||||||||||||| |||| |||| | |||||||||||| ||||| |
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| T |
28297420 |
aattcttgtaaaatctcaaatatataccaaaatctagacttaggcttccaaaacccttcatcca |
28297483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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