View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_low_11 (Length: 458)

Name: NF2562_low_11
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_low_11
NF2562_low_11
[»] chr5 (20 HSPs)
chr5 (127-441)||(7737041-7737355)
chr5 (1-124)||(12807000-12807125)
chr5 (1-124)||(25773654-25773779)
chr5 (1-124)||(10285204-10285329)
chr5 (1-124)||(30720639-30720764)
chr5 (1-122)||(40886757-40886880)
chr5 (1-124)||(37900771-37900896)
chr5 (1-122)||(36561246-36561369)
chr5 (1-118)||(7277569-7277688)
chr5 (3-91)||(25683377-25683467)
chr5 (11-124)||(16983263-16983380)
chr5 (1-81)||(30403108-30403191)
chr5 (1-124)||(734485-734609)
chr5 (6-79)||(23098386-23098461)
chr5 (3-70)||(16054173-16054240)
chr5 (1-124)||(39070888-39071013)
chr5 (318-397)||(7768105-7768181)
chr5 (80-124)||(15305216-15305260)
chr5 (1-125)||(11319563-11319689)
chr5 (1-69)||(1056429-1056498)
[»] chr8 (28 HSPs)
chr8 (1-124)||(43275546-43275669)
chr8 (1-122)||(30999670-30999791)
chr8 (1-125)||(2540078-2540204)
chr8 (1-124)||(40918878-40919001)
chr8 (1-124)||(3585456-3585581)
chr8 (1-124)||(11174370-11174495)
chr8 (1-120)||(11646472-11646593)
chr8 (1-124)||(40058450-40058575)
chr8 (1-124)||(37345576-37345701)
chr8 (1-122)||(7146920-7147043)
chr8 (1-124)||(36068085-36068210)
chr8 (1-124)||(27035002-27035126)
chr8 (1-124)||(20546436-20546559)
chr8 (1-125)||(28562425-28562552)
chr8 (1-81)||(28326804-28326883)
chr8 (1-71)||(13881101-13881174)
chr8 (76-125)||(10646596-10646645)
chr8 (76-124)||(8697898-8697946)
chr8 (76-124)||(41307961-41308009)
chr8 (76-124)||(45278701-45278749)
chr8 (1-125)||(28567923-28568049)
chr8 (1-125)||(28575516-28575642)
chr8 (76-124)||(40486453-40486501)
chr8 (25-71)||(26629182-26629228)
chr8 (3-122)||(35866621-35866742)
chr8 (1-70)||(10181004-10181074)
chr8 (3-71)||(39151464-39151533)
chr8 (31-79)||(30906869-30906917)
[»] chr6 (20 HSPs)
chr6 (1-124)||(7761306-7761429)
chr6 (1-124)||(1605584-1605709)
chr6 (1-124)||(29260197-29260322)
chr6 (1-122)||(30734630-30734753)
chr6 (1-124)||(8626487-8626612)
chr6 (1-123)||(13757214-13757338)
chr6 (1-114)||(31559883-31559998)
chr6 (3-124)||(15064843-15064966)
chr6 (16-123)||(30734772-30734879)
chr6 (1-114)||(8235639-8235754)
chr6 (1-120)||(17942452-17942575)
chr6 (1-124)||(4129440-4129557)
chr6 (76-124)||(19996715-19996763)
chr6 (9-78)||(21277589-21277659)
chr6 (18-71)||(33845449-33845502)
chr6 (1-80)||(14287038-14287118)
chr6 (1-81)||(3798151-3798233)
chr6 (4-78)||(11370635-11370711)
chr6 (3-79)||(26860819-26860893)
chr6 (88-124)||(19996327-19996363)
[»] chr3 (29 HSPs)
chr3 (1-124)||(36881287-36881410)
chr3 (1-124)||(198860-198985)
chr3 (1-124)||(13364848-13364973)
chr3 (1-124)||(19241815-19241940)
chr3 (1-124)||(23088078-23088203)
chr3 (1-124)||(46694257-46694382)
chr3 (2-124)||(29375143-29375267)
chr3 (1-122)||(3383083-3383206)
chr3 (1-120)||(43750146-43750267)
chr3 (10-135)||(13702762-13702890)
chr3 (34-122)||(32835138-32835226)
chr3 (51-124)||(27707363-27707436)
chr3 (76-124)||(44277455-44277503)
chr3 (44-112)||(48820444-48820512)
chr3 (27-124)||(37293442-37293539)
chr3 (76-124)||(12094587-12094635)
chr3 (3-79)||(44522491-44522567)
chr3 (1-77)||(19897074-19897152)
chr3 (60-132)||(48963152-48963223)
chr3 (76-124)||(19911514-19911562)
chr3 (1-70)||(37780996-37781067)
chr3 (3-78)||(1455297-1455374)
chr3 (76-120)||(4235760-4235803)
chr3 (76-124)||(38805250-38805298)
chr3 (31-122)||(53559789-53559880)
chr3 (76-120)||(4226716-4226759)
chr3 (88-124)||(19912174-19912210)
chr3 (2-38)||(27707136-27707172)
chr3 (88-124)||(38806341-38806377)
[»] scaffold1431 (1 HSPs)
scaffold1431 (1-131)||(46-179)
[»] chr7 (18 HSPs)
chr7 (1-124)||(10981513-10981638)
chr7 (1-124)||(27813816-27813941)
chr7 (3-124)||(47110456-47110577)
chr7 (1-124)||(36453271-36453396)
chr7 (1-122)||(25614500-25614621)
chr7 (1-122)||(40348967-40349090)
chr7 (2-71)||(16360442-16360511)
chr7 (3-79)||(16662146-16662222)
chr7 (3-79)||(17636506-17636582)
chr7 (1-81)||(7743544-7743625)
chr7 (1-81)||(3091565-3091647)
chr7 (76-124)||(25060133-25060181)
chr7 (1-79)||(37983206-37983282)
chr7 (76-124)||(2911548-2911596)
chr7 (1-69)||(27942186-27942256)
chr7 (5-63)||(27021566-27021624)
chr7 (88-136)||(2910851-2910900)
chr7 (3-40)||(28200298-28200335)
[»] chr4 (25 HSPs)
chr4 (1-124)||(21310430-21310555)
chr4 (1-124)||(25704656-25704781)
chr4 (1-122)||(24706394-24706517)
chr4 (1-122)||(22321414-22321537)
chr4 (1-124)||(12071566-12071691)
chr4 (1-124)||(14261049-14261174)
chr4 (1-124)||(34324729-34324855)
chr4 (1-124)||(40122632-40122757)
chr4 (1-122)||(44568844-44568967)
chr4 (1-124)||(21661682-21661807)
chr4 (1-124)||(21670446-21670571)
chr4 (1-122)||(50767871-50767994)
chr4 (3-123)||(20249162-20249283)
chr4 (1-124)||(31892243-31892364)
chr4 (16-119)||(1988046-1988150)
chr4 (1-78)||(32543532-32543610)
chr4 (1-81)||(20714495-20714577)
chr4 (2-123)||(26676714-26676837)
chr4 (1-79)||(6129095-6129175)
chr4 (1-57)||(21064834-21064890)
chr4 (1-81)||(19692771-19692853)
chr4 (1-81)||(19703356-19703438)
chr4 (44-81)||(48652268-48652305)
chr4 (8-69)||(34284171-34284234)
chr4 (76-114)||(19361662-19361700)
[»] chr1 (38 HSPs)
chr1 (1-124)||(284338-284463)
chr1 (1-124)||(23045426-23045551)
chr1 (1-122)||(47037999-47038120)
chr1 (1-136)||(321618-321756)
chr1 (1-124)||(40783804-40783929)
chr1 (3-124)||(24772054-24772177)
chr1 (3-124)||(27211113-27211236)
chr1 (1-131)||(23526237-23526370)
chr1 (3-109)||(33082765-33082873)
chr1 (1-122)||(46771644-46771767)
chr1 (1-114)||(52037269-52037382)
chr1 (3-78)||(1837978-1838053)
chr1 (3-79)||(1749357-1749435)
chr1 (1-81)||(52478016-52478096)
chr1 (76-124)||(3943065-3943113)
chr1 (76-124)||(9588675-9588723)
chr1 (1-81)||(34458870-34458950)
chr1 (76-124)||(41959083-41959131)
chr1 (3-70)||(7765072-7765141)
chr1 (76-122)||(13984991-13985037)
chr1 (2-81)||(40261419-40261501)
chr1 (6-69)||(40562733-40562797)
chr1 (1-124)||(51064900-51065028)
chr1 (9-81)||(3657125-3657199)
chr1 (1-79)||(27143158-27143239)
chr1 (3-81)||(31003935-31004012)
chr1 (88-124)||(9589631-9589667)
chr1 (1-70)||(18396754-18396825)
chr1 (2-70)||(25929173-25929241)
chr1 (63-115)||(40564241-40564293)
chr1 (88-124)||(44227853-44227889)
chr1 (76-124)||(44228228-44228276)
chr1 (46-81)||(14351954-14351989)
chr1 (76-121)||(1168369-1168414)
chr1 (5-82)||(21623680-21623756)
chr1 (88-124)||(3943763-3943799)
chr1 (1-61)||(24876633-24876692)
chr1 (88-124)||(41959809-41959845)
[»] chr2 (19 HSPs)
chr2 (1-124)||(3518913-3519038)
chr2 (1-124)||(23366794-23366919)
chr2 (1-124)||(39938175-39938300)
chr2 (1-124)||(1102508-1102633)
chr2 (4-124)||(37673887-37674009)
chr2 (3-124)||(12969888-12970011)
chr2 (1-101)||(1646317-1646417)
chr2 (1-52)||(22388282-22388335)
chr2 (76-124)||(34224378-34224426)
chr2 (4-71)||(39562037-39562104)
chr2 (16-81)||(35179097-35179164)
chr2 (3-81)||(19976380-19976459)
chr2 (1-70)||(14779838-14779907)
chr2 (1-66)||(34242040-34242105)
chr2 (44-119)||(1002922-1002997)
chr2 (1-81)||(18078104-18078186)
chr2 (31-78)||(32840354-32840401)
chr2 (1-54)||(4917839-4917892)
chr2 (5-66)||(14117753-14117814)
[»] scaffold0054 (1 HSPs)
scaffold0054 (3-124)||(45459-45582)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-114)||(412-525)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-124)||(175-292)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-79)||(70874-70954)
[»] scaffold0257 (1 HSPs)
scaffold0257 (76-124)||(23472-23520)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-63)||(65310-65375)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 127 - 441
Target Start/End: Original strand, 7737041 - 7737355
Alignment:
Q  127 tatatttttatgatcaacacacttaccaatgcctcatccatacgggcatgacgtcgcattcatgcattccatttactcaaatgtgttagttggtagctag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737041 tatatttttatgatcaacacacttaccaatgcctcatccatacgggcatgacgtcgcattcatgcattccatttactcaaatgtgttagttggtagctag 7737140  T
Q  227 atacaaataattcgtagcacactatttactactatagcaagtggcatgcacatacttcattgcttaaaacattagtacaaaagagaaagccagtgcaatc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7737141 atacaaataattcgtagcacactatttactactatagcaagtggcatgcacatacttcattgcttaaaacattaatacaaaagagaaagccagtgcaatc 7737240  T
Q  327 acaatagacacaaacaaatataatcaaacatggtgaacacggtgaacgtaatttggacattggttagttgggtagtgaagatggcaggtttaaagctcca 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737241 acaatagacacaaacaaatataatcaaacatggtgaacacggtgaacgtaatttggacattggttagttgggtagtgaagatggcaggtttaaagctcca 7737340  T
Q  427 cacagtagagataga 441  Q
    |||||||||||||||    
T  7737341 cacagtagagataga 7737355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 12807000 - 12807125
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12807000 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaa 12807099  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  12807100 aatggacatgtattttgaaacggagg 12807125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 25773779 - 25773654
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25773779 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaa 25773680  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  25773679 aatggacatgtattttgaaacggagg 25773654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 10285204 - 10285329
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  10285204 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttcttggttaatgcaatttctccaa 10285303  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||||||||| ||||||||||||||||    
T  10285304 aatagacatctattttgaaacggagg 10285329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 30720639 - 30720764
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720639 tgaaataatagatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 30720738  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  30720739 aatggacatgtattttgaaacggagg 30720764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 40886757 - 40886880
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  40886757 tgaaataataaatgattaagggtattatagaaaatacacacatattttcatcaaaaataacaaaatttattcgatttcttggttagtgcaatttctccaa 40886856  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    |||  |||||||||||||||||||    
T  40886857 aatgaacatgtattttgaaacgga 40886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 37900771 - 37900896
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  37900771 tgaaataataaatggttaagggtattatagaaaacacacatataatttcatcaaaaatatcaaaatttatttagtttcttggttactgcaatttctccaa 37900870  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||  ||||||||||||||||||    
T  37900871 aatggatgtgtattttgaaacggagg 37900896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 36561246 - 36561369
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||    
T  36561246 tgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattactgcaatttttctaa 36561345  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  36561346 aatggacatgtattttgaaacgga 36561369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7277569 - 7277688
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||| |||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  7277569 tgaaataataaatggttaaaggtattatagaaaacacacacataatttgatcaaaaataacaaaatttatttggtttattggttactccaatttctccaa 7277668  T
Q  99 aatagacatgtattttgaaa 118  Q
    ||||||||||||||||||||    
T  7277669 aatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 25683377 - 25683467
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 91  Q
    |||||||||||| ||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  25683377 aaataataaatggttaagggtattatagaaaacacacacataattttatcaaaaataacaaaatttatttggtttcttggttattgcaatt 25683467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 16983380 - 16983263
Alignment:
Q  11 aatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat--ttatttggtttcttggttagtgcaatttctccaaaatagaca 106  Q
    |||| ||||||||||| ||||||| ||||||||  |||||||||||| || ||||   ||||||||||||||||||| ||||||||||||||||| ||||    
T  16983380 aatggttaagggtattgtagaaaaaacacatatcatttcatcaaaaaaaaaaaaaaaattatttggtttcttggttactgcaatttctccaaaatggaca 16983281  T
Q  107 tgtattttgaaacggagg 124  Q
    ||||||||||||| ||||    
T  16983280 tgtattttgaaacagagg 16983263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 30403108 - 30403191
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaaca---cacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||| ||||||||||| ||||||||||||| |   |||| | ||||||||||||||||||||||||||||||||||||||    
T  30403108 tgaaataacaaatgattaagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaatttatttggtttcttggt 30403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 734485 - 734609
Alignment:
Q  1 tgaaataataaatgattaagggtattatag-aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaa 99  Q
    ||||||||||||||| |||||||||||||| |||||||| | | ||||||||| ||| |||||||||||||| ||  |||||  | | ||||||| ||||    
T  734485 tgaaataataaatgagtaagggtattatagaaaaacacaaagaatttcatcaataatgacaaaatttatttgattctttggtatgagtaatttcttcaaa 734584  T
Q  100 atagacatgtattttgaaacggagg 124  Q
    || |||| ||||| |||||||||||    
T  734585 atggacaagtattgtgaaacggagg 734609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 23098386 - 23098461
Alignment:
Q  6 taataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    ||||||||| ||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||| ||||||||    
T  23098386 taataaatggttaagggtattataggaaacatgcacataatttcatcaaaaataacaaaatttatttagtttcttg 23098461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 16054240 - 16054173
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttattt 70  Q
    |||||||||||| | |||| |||||||||||| ||||| | |||||| ||||||||||||||||||||    
T  16054240 aaataataaatggtcaaggatattatagaaaaaacacaaaatttcataaaaaataacaaaatttattt 16054173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 39071013 - 39070888
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||| |||||||||||||||||| |||||     ||||||||||||| |||| ||||||||| || |||  |  ||| ||||||| |||    
T  39071013 tgaaataataaatgagtaagggtattatagaaaaaacacaacagatttcatcaaaaatgacaacatttatttgattccttaatatgtgtaatttcttcaa 39070914  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    |||  ||| ||||| |||||||||||    
T  39070913 aatgaacaagtattgtgaaacggagg 39070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 7768105 - 7768181
Alignment:
Q  318 agtgcaatcacaatagacacaaacaaatataatcaaacatggtgaacacggtgaacgtaatttggacattggttagttgg 397  Q
    ||||||||||||||||| |  ||||||| |||| |||||||||||||| |||||||||||||||| |||| | |||||||    
T  7768105 agtgcaatcacaatagaaa--aacaaat-taattaaacatggtgaacatggtgaacgtaatttggtcatttggtagttgg 7768181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 15305216 - 15305260
Alignment:
Q  80 gttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  15305216 gttactgcaatttctccaaaatggacatgtattttgaaacggagg 15305260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11319689 - 11319563
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||| |||||||||||||||||| | ||| |   |||||| |||||| |||| ||||||||| ||  || ||  ||| ||||||| |||    
T  11319689 tgaaataataaatgagtaagggtattatagaaaaaaaacaaagaatttcataaaaaattacaacatttatttgattcattagtatgtgtaatttcttcaa 11319590  T
Q  99 aatagacatgtattttgaaacggagga 125  Q
    ||| ||||  |||| ||||||||||||    
T  11319589 aatggacaaatattgtgaaacggagga 11319563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1056429 - 1056498
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa-cacacatattttcatcaaaaataacaaaatttatt 69  Q
    |||||||||||||||| ||  ||||||||||||| |||| | | |||||| |||||||||||||||||||    
T  1056429 tgaaataataaatgatcaatagtattatagaaaaacacaaagaatttcattaaaaataacaaaatttatt 1056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 43275546 - 43275669
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275546 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 43275645  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  43275646 tggacatgtattttgaaacggagg 43275669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30999670 - 30999791
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999670 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 30999769  T
Q  101 tagacatgtattttgaaacgga 122  Q
    | ||||||||||||||||||||    
T  30999770 ttgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 2540078 - 2540204
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2540078 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 2540177  T
Q  99 aatagacatgtattttgaaacggagga 125  Q
    ||| |||||||||||||||||||||||    
T  2540178 aatggacatgtattttgaaacggagga 2540204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 40918878 - 40919001
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40918878 tgaaataataaatgattaagggtattatagaaaacacacatgttttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 40918977  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  40918978 tggacatgtattttgaaacggagg 40919001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 3585581 - 3585456
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3585581 tgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 3585482  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  3585481 aatggacatgtattttgaaacggagg 3585456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11174370 - 11174495
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174370 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 11174469  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    |||  |||||||||||||||||||||    
T  11174470 aatgaacatgtattttgaaacggagg 11174495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11646472 - 11646593
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11646472 tgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 11646571  T
Q  99 aatagacatgtattttgaaacg 120  Q
    ||| ||||||||||||||||||    
T  11646572 aatggacatgtattttgaaacg 11646593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 40058450 - 40058575
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40058450 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccga 40058549  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  40058550 aatggacatgtattttgaaacggagg 40058575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 37345701 - 37345576
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||    
T  37345701 tgaaataataaatgattaagggtattatagaaaacacacacatattttcattaaaaataacaaaatttatttggtttcttggttggtgcaatttcttcaa 37345602  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  37345601 aatggacatgtattttgaaacggagg 37345576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7147043 - 7146920
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  7147043 tgaaataataaatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttcttcaa 7146944  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  7146943 aatggacatgtattttgaaacgga 7146920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36068210 - 36068085
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  36068210 tgaaataattaatgattaagggtattatagaaaacacacatatattttcattaaaaataacaaaatttatttggttttttggttagtacaattcctccaa 36068111  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  36068110 aatggacatgtattttgaaacggagg 36068085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27035126 - 27035002
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaa 99  Q
    |||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  27035126 tgaaataataaatggttaagggtattatagaaacacagacataatttcatcaaaaataaaaaaaattatttggtttcttggttactgcaatttctccaaa 27035027  T
Q  100 atagacatgtattttgaaacggagg 124  Q
    || ||||||||||||||||||||||    
T  27035026 atggacatgtattttgaaacggagg 27035002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 20546436 - 20546559
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||||  |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||  ||||||| ||  |||||||||| |||||    
T  20546436 tgaaataataaattgttaagggtatcatataaaacacacataatttcatcaaaaataacaaaatttatttaatttcttgattgttgcaatttcttcaaaa 20546535  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||| |||||||||| |||||    
T  20546536 tggacatatattttgaaatggagg 20546559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 28562552 - 28562425
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 97  Q
    |||||| |||||||| ||||||||||||||||||   |||| | | ||||||||||||| |||| ||||||||| || ||||||  ||| ||||||| ||    
T  28562552 tgaaatcataaatgagtaagggtattatagaaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttca 28562453  T
Q  98 aaatagacatgtattttgaaacggagga 125  Q
    |||| |||| ||||||||||||||||||    
T  28562452 aaatggacaagtattttgaaacggagga 28562425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28326804 - 28326883
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||||  ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  28326804 tgaaataataaatagttaagagtattattgaaaa-acacataatttcatcaaaaataacaaaatttatttgatttcttggt 28326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13881101 - 13881174
Alignment:
Q  1 tgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaatttatttg 71  Q
    ||||||||||||||||||||||||||||||   ||||| |||| | ||||||||||||||||||||||||||||    
T  13881101 tgaaataataaatgattaagggtattatagaaaaaaacgcacacaatttcatcaaaaataacaaaatttatttg 13881174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 10646645 - 10646596
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagga 125  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  10646645 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagga 10646596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 8697898 - 8697946
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  8697898 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 8697946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 41307961 - 41308009
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  41307961 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 41308009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 45278701 - 45278749
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  45278701 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 45278749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 28568049 - 28567923
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 97  Q
    |||||||||||||||  | |||||||||||||||   |||| | | |||||| |||||| |||| ||||||||| ||  |||||  ||| ||||||| ||    
T  28568049 tgaaataataaatgagca-gggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttcttca 28567951  T
Q  98 aaatagacatgtattttgaaacggagga 125  Q
    |||| |||| ||||||||||||||||||    
T  28567950 aaatggacaagtattttgaaacggagga 28567923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 28575642 - 28575516
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 97  Q
    |||||||||||||||  | |||||||||||||||   |||| | | |||||| |||||| |||| ||||||||| ||  |||||  ||| ||||||| ||    
T  28575642 tgaaataataaatgagca-gggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttcttca 28575544  T
Q  98 aaatagacatgtattttgaaacggagga 125  Q
    |||| |||| ||||||||||||||||||    
T  28575543 aaatggacaagtattttgaaacggagga 28575516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 40486453 - 40486501
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  40486453 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggagg 40486501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 26629182 - 26629228
Alignment:
Q  25 ttatagaaaacacacatattttcatcaaaaataacaaaatttatttg 71  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||    
T  26629182 ttatagaaaaaacacataatttcatcaaacataacaaaatttatttg 26629228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 35866742 - 35866621
Alignment:
Q  3 aaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| |||||||||||||||  |||||||| | | |||||| ||||||||||| |||||| |  |||||||||   |  |||||||  ||||    
T  35866742 aaataataaatgtttaagggtattatagaaaaaacacaaagaatttcatgaaaaataacaacatttatctaatttcttggtatatataatttctttaaaa 35866643  T
Q  101 tagacatgtattttgaaacgga 122  Q
    | |||| ||||| |||||||||    
T  35866642 tggacaagtattgtgaaacgga 35866621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10181004 - 10181074
Alignment:
Q  1 tgaaataataaatgattaagggtattat-agaaaacacacatattttcatcaaaaataacaaaatttattt 70  Q
    |||||||||||||| |||| |||||||| | |||||| || || ||| || ||||||||||||||||||||    
T  10181004 tgaaataataaatggttaacggtattataaaaaaacaaacgtaattttataaaaaataacaaaatttattt 10181074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 39151533 - 39151464
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacac-acatattttcatcaaaaataacaaaatttatttg 71  Q
    |||||||||||||| ||   |||||||||||| |  ||||| ||||||||||||||||||| ||||||||    
T  39151533 aaataataaatgataaattatattatagaaaaaaatacataatttcatcaaaaataacaaagtttatttg 39151464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 30906869 - 30906917
Alignment:
Q  31 aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    ||||| |||| | |||||| ||||||||||||||||||||| |||||||    
T  30906869 aaaactcacaaaatttcataaaaaataacaaaatttatttgatttcttg 30906917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 7761429 - 7761306
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7761429 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttagtttcttggttagtgcaatttctccaaaa 7761330  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  7761329 tggacatgtattttgaaacggagg 7761306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 1605709 - 1605584
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605709 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 1605610  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  1605609 aatggacatgtattttgaaacggagg 1605584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 29260322 - 29260197
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260322 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 29260223  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  29260222 aatggacatgtattttgaaacggagg 29260197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30734630 - 30734753
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734630 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 30734729  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  30734730 aatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 8626612 - 8626487
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  8626612 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttcttcaa 8626513  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  8626512 aatggacatgtattttgaaacggagg 8626487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 13757338 - 13757214
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13757338 tgaaataataattgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgtaatttctccaa 13757239  T
Q  99 aatagacatgtattttgaaacggag 123  Q
    ||| |||||||||||||||||||||    
T  13757238 aatggacatgtattttgaaacggag 13757214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 31559883 - 31559998
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  31559883 tgaaataataaatgattaagggtattacagaaaacatacacatattttcatcaaaaataacaaaatttatttgattttttggttaatgcaatttctccaa 31559982  T
Q  99 aatagacatgtatttt 114  Q
    ||| ||||||||||||    
T  31559983 aatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 15064843 - 15064966
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| ||||||||| |||| |||||||||| ||  |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  15064843 aaataataaatggttaagggtagtataaaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttggttgctgcaatttctctaaaa 15064942  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  15064943 tggacatgtattttgaaacggagg 15064966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 30734772 - 30734879
Alignment:
Q  16 ttaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttg 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||| |||||||||| |||||| |||||||||||||    
T  30734772 ttaagggtattatagaaaacacacataatttcatcaaaaataacaaaatttatttgatttttttgttactgcaatttcttcaaaatggacatgtattttg 30734871  T
Q  116 aaacggag 123  Q
    ||||||||    
T  30734872 aaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8235754 - 8235639
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||  | |||| |||||||||||| ||||||| |||||||||||| |||||||||| |||    
T  8235754 tgaaataataaatgattaagggtattatagaaaacacacacataatatcataaaaaataacaaattttatttcgtttcttggttactgcaatttcttcaa 8235655  T
Q  99 aatagacatgtatttt 114  Q
    |||  |||||||||||    
T  8235654 aatgtacatgtatttt 8235639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 17942575 - 17942452
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatt--tatttggtttcttggttagtgcaatttctcc 96  Q
    |||||||||||||| |||||||||||||||| |||||  ||||| ||||||||||||||| ||||    |||||||||||||||||| |||||||||||     
T  17942575 tgaaataataaatggttaagggtattatagagaacacgcacataatttcatcaaaaataaaaaaaaaaatatttggtttcttggttactgcaatttctca 17942476  T
Q  97 aaaatagacatgtattttgaaacg 120  Q
    ||||| ||||||||||||||||||    
T  17942475 aaaatggacatgtattttgaaacg 17942452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 4129557 - 4129440
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||        ||||| ||||||||||||||    
T  4129557 tgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttattt--------ggttactgcaatttctccaa 4129466  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    | | || |||||||||||||||||||    
T  4129465 agtggatatgtattttgaaacggagg 4129440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 19996715 - 19996763
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19996715 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagg 19996763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 21277589 - 21277659
Alignment:
Q  9 taaatgattaagggtattatagaaaa-cacacatattttcatcaaaaataacaaaatttatttggtttctt 78  Q
    ||||| |||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||| ||||||    
T  21277589 taaataattaagggtattatagaaaaacacataaattttcataaaaaataacaaaatttatttgatttctt 21277659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 33845449 - 33845502
Alignment:
Q  18 aagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttg 71  Q
    ||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||    
T  33845449 aagggtactatagaaaaaatacataatttcatcaaaaataacaaaatttatttg 33845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14287118 - 14287038
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaaca-cacatattttcatcaaaaataacaaaatttatttggtttcttgg 80  Q
    |||||||||||| |  |||||||||||||||||| | |||| | |||||| ||||||||||||||||||||| ||| ||||    
T  14287118 tgaaataataaaggggtaagggtattatagaaaaaagcacagaatttcataaaaaataacaaaatttatttgatttattgg 14287038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3798233 - 3798151
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatatt--ttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    ||||||||||||||  ||||||| |||||||||| ||||| ||   ||||| ||||||||||||||||||||| ||| |||||    
T  3798233 tgaaataataaatgtgtaagggtgttatagaaaaaacacaaataacttcatgaaaaataacaaaatttatttgattttttggt 3798151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 11370635 - 11370711
Alignment:
Q  4 aataataaatgattaagggtattatagaaaacacacat--attttcatcaaaaataacaaaatttatttggtttctt 78  Q
    ||||||||||| ||||| |||||||| |||| |||||   | | |||||||||||||||||||||||||| ||||||    
T  11370635 aataataaatggttaagagtattataaaaaaaacacaatgaatatcatcaaaaataacaaaatttatttgatttctt 11370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 26860893 - 26860819
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||| ||||||||  ||||||| | ||||| | ||||||||||||||| |||| ||||||| |||||||    
T  26860893 aaataataaatggttaagggt--tatagaataaacacaaaatttcatcaaaaataaaaaaagttatttgatttcttg 26860819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 19996363 - 19996327
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagg 19996327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36881410 - 36881287
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881410 tgaaataataaataattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 36881311  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  36881310 tggacatgtattttgaaacggagg 36881287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 198985 - 198860
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  198985 tgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtcagtgcaatttctccaa 198886  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  198885 aatggacatgtattttgaaacggagg 198860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 13364973 - 13364848
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13364973 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 13364874  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    |||  |||||||||||||||||||||    
T  13364873 aatgaacatgtattttgaaacggagg 13364848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 19241815 - 19241940
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19241815 tgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcaccaa 19241914  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  19241915 aatggacatgtattttgaaacggagg 19241940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23088078 - 23088203
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23088078 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaa 23088177  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||||||||| ||||||||||| ||||    
T  23088178 aatagacatatattttgaaacagagg 23088203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 46694257 - 46694382
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46694257 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctccaa 46694356  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||  ||||||||||||||||||||||    
T  46694357 aaaggacatgtattttgaaacggagg 46694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 29375267 - 29375143
Alignment:
Q  2 gaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaa 99  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  29375267 gaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataagaaaatttatttggtttcttggttactgcaatttctccaaa 29375168  T
Q  100 atagacatgtattttgaaacggagg 124  Q
    || ||||||||||||||||||||||    
T  29375167 atggacatgtattttgaaacggagg 29375143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3383206 - 3383083
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3383206 tgaaataataaatgtttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctccaa 3383107  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||| ||||||||||||||    
T  3383106 aatggacatatattttgaaacgga 3383083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43750267 - 43750146
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  43750267 tgaaataataaatggttaagtgtattatagaaaacacacatataatttcatcaaaaataacaaaatttatttggtttcttggttactccaatttctccaa 43750168  T
Q  99 aatagacatgtattttgaaacg 120  Q
    ||| ||||||||||||||||||    
T  43750167 aatggacatgtattttgaaacg 43750146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 13702890 - 13702762
Alignment:
Q  10 aaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacat 107  Q
    ||||| |||| |||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  13702890 aaatggttaaaggtattatagaaaacaaacatataatttcatcaaaaatatcaaaatttatttggtttcttggttactgcaatttctccaaaataggcat 13702791  T
Q  108 gtattttgaaacgga-ggagtatattttt 135  Q
    ||||||| ||| ||| ||||||| |||||    
T  13702790 gtattttaaaatggatggagtatcttttt 13702762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 32835138 - 32835226
Alignment:
Q  34 acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacgga 122  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  32835138 acacacataatttcatcaaaaataacaaaatttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 27707363 - 27707436
Alignment:
Q  51 aaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  27707363 aaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacggagg 27707436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 44277455 - 44277503
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44277455 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagg 44277503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 48820444 - 48820512
Alignment:
Q  44 tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtatt 112  Q
    |||||||||||||||||||||||||||||||| |||| ||  | ||||||||||||||| |||||||||    
T  48820444 tttcatcaaaaataacaaaatttatttggtttattggataccgtaatttctccaaaataaacatgtatt 48820512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 37293539 - 37293442
Alignment:
Q  27 atagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||| | ||||||||||||| |||| ||||||||| || ||||||  ||| ||||||| |||||| |||| ||||| |||||||||||    
T  37293539 atagaaaaaacacagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattgtgaaacggagg 37293442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 12094635 - 12094587
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  12094635 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 12094587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 44522567 - 44522491
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||| ||||  ||||||||||||| ||||||  |||||| |||||||| |||||||||||| |||||||    
T  44522567 aaataataaatggttaaaagtattatagaaaaaacacatgatttcataaaaaataataaaatttatttgatttcttg 44522491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19897074 - 19897152
Alignment:
Q  1 tgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttct 77  Q
    |||||||||||| || ||||||||||||||  |||||||| | | |||||| ||||||||||||||||||||| |||||    
T  19897074 tgaaataataaaagagtaagggtattatagaaaaaacacaaagaatttcataaaaaataacaaaatttatttgatttct 19897152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 48963223 - 48963152
Alignment:
Q  60 aaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacgga-ggagtatatt 132  Q
    |||| ||||||| ||| ||||||||  |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48963223 aaaaattatttgatttattggttag--caatttctccaaaatagatatgtattttgaaacggagggagtatatt 48963152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 19911562 - 19911514
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||||    
T  19911562 cttggttactgcaatttctccaaaatgaacatgtattttgaaacggagg 19911514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37781067 - 37780996
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttattt 70  Q
    |||||||||||||| ||||  |||||||||||||  |||||| | ||||||||||||||| |||||||||||    
T  37781067 tgaaataataaatggttaatagtattatagaaaaaacacacagaatttcatcaaaaataataaaatttattt 37780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 1455297 - 1455374
Alignment:
Q  3 aaataataaatgattaagggtattatagaa--aacacacatattttcatcaaaaataacaaaatttatttggtttctt 78  Q
    |||||||||||| | ||| | |||||||||  |||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  1455297 aaataataaatggtgaagagaattatagaagaaacacaaataattttatcaaaaataacaaaatttatttgatttctt 1455374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 4235803 - 4235760
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacg 120  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  4235803 cttggttagtgcaatttctccaaaa-cgacatgtattttgaaacg 4235760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 38805298 - 38805250
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||| ||||| |||||||||||| |||||||||    
T  38805298 cttggttactgcaatttctctaaaatggacatgtattttaaaacggagg 38805250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 53559789 - 53559880
Alignment:
Q  31 aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacgga 122  Q
    |||||||| | | |||||||||||||||||| ||||||||| ||||||| |  ||| ||||||| |||||   ||| ||||| |||||||||    
T  53559789 aaaacacagagaatttcatcaaaaataacaacatttatttgttttcttgatatgtgtaatttcttcaaaagcaacaagtattgtgaaacgga 53559880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 4226759 - 4226716
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacg 120  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||    
T  4226759 cttggttactgcaatttctccaaaa-cgacatgtattttgaaacg 4226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 19912174 - 19912210
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagg 19912210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 27707136 - 27707172
Alignment:
Q  2 gaaataataaatgattaagggtattatagaaaacaca 38  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  27707136 gaaataataaatggttaaggatattatagaaaacaca 27707172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 38806341 - 38806377
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagg 38806377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 46 - 179
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 145  T
Q  99 aatagacatgtattttgaaacggag-gagtatat 131  Q
    ||| ||||||||||||||||||||| ||||||||    
T  146 aatggacatgtattttgaaacggagagagtatat 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 10981638 - 10981513
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10981638 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 10981539  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  10981538 aatggacatgtattttgaaacggagg 10981513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27813941 - 27813816
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacaca--catattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27813941 tgaaataataaatgattaagggtattatagaaaacacatacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 27813842  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  27813841 aatggacatgtattttgaaacggagg 27813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 47110577 - 47110456
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  47110577 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttattttgtttcttggttagtgcaatttctccaaaatg 47110478  T
Q  103 gacatgtattttgaaacggagg 124  Q
    |||||||||||||||| |||||    
T  47110477 gacatgtattttgaaatggagg 47110456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 36453271 - 36453396
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36453271 tgaaataataaatgattaagggtattatagaaaaaacacacatattttcatcaaaaataataaaatttatttggtttcttggttagtgcaatttctccaa 36453370  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  36453371 aatggacatgtattttgaaacggagg 36453396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 25614500 - 25614621
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25614500 tgaaataataaatgattaagggtatttcagaaaacacacatattttcatcaaaaataacaaaatttatttggttttttggttagtgcaatttctccaaaa 25614599  T
Q  101 tagacatgtattttgaaacgga 122  Q
    | ||||||||||||||||||||    
T  25614600 tggacatgtattttgaaacgga 25614621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40349090 - 40348967
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40349090 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaa 40348991  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  40348990 aatggacatgtattttgaaacgga 40348967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 16360511 - 16360442
Alignment:
Q  2 gaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttg 71  Q
    ||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  16360511 gaaataataaatggttaagggtattatagaaaaaacacagaatttcatcaaaaataacaaaatttatttg 16360442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 16662222 - 16662146
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||  |||||||    
T  16662222 aaataataaatggttaagggtattataaaaaaaacacaaattttcatcaaaaataacaaaatttattttatttcttg 16662146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 17636582 - 17636506
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||  |||||||    
T  17636582 aaataataaatggttaagggtattataaaaaaaacacaaattttcatcaaaaataacaaaatttattttatttcttg 17636506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7743544 - 7743625
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    ||||||||||||| ||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||| | |||||||    
T  7743544 tgaaataataaataattaacggtattatagaaagaaacacataatttcatcaaaaataacaaaatttatttgatatcttggt 7743625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3091647 - 3091565
Alignment:
Q  1 tgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||||| |||||||||||||||  |||||||| | | |||||||||||||||||||||||||||| ||| |||||    
T  3091647 tgaaataataaatggttaagggtattatagaaaaaacacaaagaatttcatcaaaaataacaaaatttatttgattttttggt 3091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 25060133 - 25060181
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  25060133 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 25060181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 37983282 - 37983206
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||||| |||| ||||||||| |||||| | |   |||||||||||||||||||||||||||| |||||||    
T  37983282 tgaaataataaatggttaaaggtattataaaaaacataaaa--tttcatcaaaaataacaaaatttatttgatttcttg 37983206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 2911548 - 2911596
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  2911548 cttggttactgcaatttctccaaaatggacatgtattttgaaatggagg 2911596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27942186 - 27942256
Alignment:
Q  1 tgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatt 69  Q
    |||||||||||||| |||| ||||||||||  |||||||||||| | |||| |||||||| ||||||||||    
T  27942186 tgaaataataaatggttaaaggtattatagaaaaaacacacataatctcattaaaaataaaaaaatttatt 27942256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 27021624 - 27021566
Alignment:
Q  5 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaa 63  Q
    ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||    
T  27021624 ataataaataattaaggttattatagaaaaaagacatagtttcatcaaaagtaacaaaa 27021566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 2910900 - 2910851
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacgga-ggagtatattttta 136  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagtatattttta 2910851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 28200335 - 28200298
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacaca 40  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28200335 aaataataaatgattaaggatattatagaaaaaacaca 28200298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 21310555 - 21310430
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310555 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 21310456  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  21310455 aatggacatgtattttgaaacggagg 21310430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 25704781 - 25704656
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704781 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 25704682  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  25704681 aatggacatgtattttgaaacggagg 25704656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 24706394 - 24706517
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706394 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 24706493  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  24706494 aatggacatgtattttgaaacgga 24706517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22321414 - 22321537
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22321414 tgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 22321513  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  22321514 aatggacatgtattttgaaacgga 22321537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 12071691 - 12071566
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  12071691 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttattggttagtgcaatttctccaa 12071592  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  12071591 aatggacatgtattttgaaacggagg 12071566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 14261174 - 14261049
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261174 tgaaataataaattattaagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 14261075  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  14261074 aatggacatgtattttgaaacggagg 14261049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34324729 - 34324855
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaattta-tttggtttcttggttagtgcaatttctcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  34324729 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttaatttagtttcttggttagtgcaatttctcca 34324828  T
Q  98 aaatagacatgtattttgaaacggagg 124  Q
    |||| ||||||||||||||||||||||    
T  34324829 aaatggacatgtattttgaaacggagg 34324855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 40122632 - 40122757
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  40122632 tgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggttttttggttactgcaatttctccaa 40122731  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  40122732 aatggacatgtattttgaaacggagg 40122757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 44568967 - 44568844
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||    
T  44568967 tgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttttttggttagtgcaatttcttcaa 44568868  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  44568867 aatggacatgtattttgaaacgga 44568844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 21661682 - 21661807
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  21661682 tgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataataaaatttatttggtttcttggttactgcaatttctccaa 21661781  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| |||||||||||||||| |||||    
T  21661782 aatggacatgtattttgaaagggagg 21661807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 21670446 - 21670571
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  21670446 tgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataaaaaaatttatttggtttcttggttactgcaatttctccaa 21670545  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| |||||||||||||||| |||||    
T  21670546 aatggacatgtattttgaaagggagg 21670571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 50767994 - 50767871
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  50767994 tgaaataataaattattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctctaa 50767895  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    |||  | |||||||||||||||||    
T  50767894 aatgaatatgtattttgaaacgga 50767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 20249162 - 20249283
Alignment:
Q  3 aaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaat 101  Q
    |||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||    
T  20249162 aaataataaatggttaagggtattatagaaacacacacataatttcttcaaaaataacaaaatttatttggtttcttggttaatacaatttatccaaaat 20249261  T
Q  102 agacatgtattttgaaacggag 123  Q
     |||||||||||||||||||||    
T  20249262 ggacatgtattttgaaacggag 20249283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 31892364 - 31892243
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||||| | || ||||||||||||||||||  || ||||||||||||||| |||||||||||| ||||||||||| ||||||||||  ||||    
T  31892364 tgaaataataaatggtcaaaggtattatagaaaacaca--taatttcatcaaaaataataaaatttatttgatttcttggttactgcaatttctttaaaa 31892267  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    |  ||||||||||||| |||||||    
T  31892266 tgaacatgtattttgatacggagg 31892243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 1988150 - 1988046
Alignment:
Q  16 ttaagggtattatagaaaacaca--catattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattt 113  Q
    |||||||||||||||||||||||  |||| ||||||||||||||| |||||||||||| |||||| |||| |||||||||||| |||||||||| |||||    
T  1988150 ttaagggtattatagaaaacacatacataatttcatcaaaaataataaaatttatttgatttcttagttactgcaatttctcc-aaatagacatatattt 1988052  T
Q  114 tgaaac 119  Q
    | ||||    
T  1988051 taaaac 1988046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32543610 - 32543532
Alignment:
Q  1 tgaaataataaatgattaagggtattat-agaaaacacacatattttcatcaaaaataacaaaatttatttggtttctt 78  Q
    |||||||||||||||||||||||||||| | |||||||| | | ||||||||||| |||||||| ||||||||||||||    
T  32543610 tgaaataataaatgattaagggtattataaaaaaacacaaagaatttcatcaaaattaacaaaaattatttggtttctt 32543532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 20714495 - 20714577
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||||| |||||| ||||||||||||   |||||||| |||||||||||||||||||||||||||| ||| |||||    
T  20714495 tgaaataataaatggttaagg-tattatagaaaaacacacacatagtttcatcaaaaataacaaaatttatttgatttattggt 20714577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 26676714 - 26676837
Alignment:
Q  2 gaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaa 99  Q
    |||||||||||||| |||||||||||||||||| ||||  | | |||||| |||||| |||| ||||||||| || ||||||  ||| ||||||| ||||    
T  26676714 gaaataataaatgagtaagggtattatagaaaaaacacgaagaatttcataaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaa 26676813  T
Q  100 atagacatgtattttgaaacggag 123  Q
    || || | ||||| ||||||||||    
T  26676814 atggataagtattgtgaaacggag 26676837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6129095 - 6129175
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||||||||||||||||| ||||||| | ||| |   ||| |||||||||||||||||||||||| |||||||    
T  6129095 tgaaataataaatgattaagggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaatttatttgatttcttg 6129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21064890 - 21064834
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaata 57  Q
    |||||||||||||  ||||| |||||||| |||||||||||| ||||||||||||||    
T  21064890 tgaaataataaatagttaagagtattataaaaaacacacataatttcatcaaaaata 21064834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19692853 - 19692771
Alignment:
Q  1 tgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    ||||||||||||||| ||||| ||||||||  |||||||| | | |||||| |||||| |||| ||||||||| |||||||||    
T  19692853 tgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggt 19692771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19703438 - 19703356
Alignment:
Q  1 tgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    ||||||||||||||| ||||| ||||||||  |||||||| | | |||||| |||||| |||| ||||||||| |||||||||    
T  19703438 tgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggt 19703356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 48652305 - 48652268
Alignment:
Q  44 tttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||||||||||||||||||| |||||||||    
T  48652305 tttcatcaaaaataacaaaatttatttgatttcttggt 48652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34284171 - 34284234
Alignment:
Q  8 ataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatt 69  Q
    |||||| ||||||||||||||||  |||| ||| ||| ||||||||||| ||||||||||||||    
T  34284171 ataaataattaagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttatt 34284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 19361700 - 19361662
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtatttt 114  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  19361700 cttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 284463 - 284338
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  284463 tgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 284364  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  284363 aatggacatgtattttgaaacggagg 284338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23045426 - 23045551
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045426 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 23045525  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  23045526 aatggacatgtattttgaaacggagg 23045551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 47037999 - 47038120
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  47037999 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttgatttcttagttagtacaatttctccaaaa 47038098  T
Q  101 tagacatgtattttgaaacgga 122  Q
    | ||||||||||||||||||||    
T  47038099 tggacatgtattttgaaacgga 47038120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 321756 - 321618
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  321756 tgaaataataaatgattaaggatattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 321657  T
Q  99 aatagacatgtattttgaaacgga-ggagtatattttta 136  Q
    |||  ||||||||||||||||||| |||||| |||||||    
T  321656 aatgaacatgtattttgaaacggagggagtaaattttta 321618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 40783804 - 40783929
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40783804 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaa 40783903  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    |||  |||||||||||||||||||||    
T  40783904 aatgaacatgtattttgaaacggagg 40783929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 24772054 - 24772177
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24772054 aaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaaaa 24772153  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  24772154 tggacatgtattttgaaacggagg 24772177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 27211113 - 27211236
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27211113 aaataataaatggttaagggtattatagaaaacacacatataatttcctcaaaaataacaaaatttatttggtttcttggttattgcaatttctccaaaa 27211212  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  27211213 tggacatgtattttgaaacggagg 27211236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 23526370 - 23526237
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23526370 tgaaataataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttgattactgcaatttctccaa 23526271  T
Q  99 aatagacatgtattttgaaacgg-aggagtatat 131  Q
    |||  ||||||||||||||| || ||||||||||    
T  23526270 aatgaacatgtattttgaaatggaaggagtatat 23526237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 33082873 - 33082765
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33082873 aaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaa 33082774  T
Q  101 tagacatgt 109  Q
    |||||||||    
T  33082773 tagacatgt 33082765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 46771767 - 46771644
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  46771767 tgaaaaaataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttaatttcttggttactgcaatttctccaa 46771668  T
Q  99 aatagacatgtattttgaaacgga 122  Q
    ||| ||||||||||||||||||||    
T  46771667 aatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 52037269 - 52037382
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| || ||||||||||| ||||    
T  52037269 tgaaataataaatggttaagagtattatagaaaacacacataattttatcaaaaataataaaatttatttggttttttggataatgcaatttctctaaaa 52037368  T
Q  101 tagacatgtatttt 114  Q
    | ||||||||||||    
T  52037369 tggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 1837978 - 1838053
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttctt 78  Q
    ||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  1837978 aaataataaatgggtaagggtattatagaaaaaacacataatttcatcaaaaataacaaaatttatttgatttctt 1838053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 1749435 - 1749357
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||| |||| | |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  1749435 aaataataaatggttaatgctattatagaaaacacacatataatttcatcaaaaataacaaaatttatttgatttcttg 1749357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 52478096 - 52478016
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||| ||||||  |||||| |||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||    
T  52478096 tgaaatgataaatttttaaggttattatagaaaaaacacaaaatttcatcaaaaataacaaaatttatttgatttcttggt 52478016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 3943113 - 3943065
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3943113 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 3943065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 9588723 - 9588675
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  9588723 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 9588675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34458870 - 34458950
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    ||||||||||||| | ||||| |||||||||||| ||||| | |||||| |||||||  |||||||||||| |||||||||    
T  34458870 tgaaataataaattagtaaggttattatagaaaaaacacagaatttcataaaaaatagaaaaatttatttgatttcttggt 34458950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 41959131 - 41959083
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  41959131 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagg 41959083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 7765141 - 7765072
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttattt 70  Q
    |||||||||||| ||| ||||||||  ||||||||||||||  ||||| |||||||||||||||||||||    
T  7765141 aaataataaatggttatgggtattacggaaaacacacatataatttcaccaaaaataacaaaatttattt 7765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 13984991 - 13985037
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacgga 122  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13984991 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 13985037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 40261419 - 40261501
Alignment:
Q  2 gaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    ||||||||||||| |||| | ||||||||||||   |||||  | ||||||||||| |||||||||||||||| |||||||||    
T  40261419 gaaataataaatggttaatgatattatagaaaaaaacacacgcaatttcatcaaaattaacaaaatttatttgatttcttggt 40261501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 40562733 - 40562797
Alignment:
Q  6 taataaatgattaagggtattatagaaaacacacatat-tttcatcaaaaataacaaaatttatt 69  Q
    ||||||||| |||| |||||||||||||||||| ||||  || ||||||||||||||||||||||    
T  40562733 taataaatggttaatggtattatagaaaacacatatataatttatcaaaaataacaaaatttatt 40562797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 51064900 - 51065028
Alignment:
Q  1 tgaaataataaatgattaagggtattat-----agaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctc 95  Q
    |||||||||||| || ||||||||||||     | |||||||| | | ||||||||||||| |||| ||||||||| || ||||||  ||| |||||||     
T  51064900 tgaaataataaacgagtaagggtattattatagaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttctt 51064999  T
Q  96 caaaatagacatgtattttgaaacggagg 124  Q
     ||||| |||| ||||| |||||||||||    
T  51065000 taaaatggacaagtattgtgaaacggagg 51065028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 3657199 - 3657125
Alignment:
Q  9 taaatgattaagggtattatagaaaacaca--catattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||| |||||| |||||||||||| |||  || | |||||| ||||||||||||||||||||| |||||||||    
T  3657199 taaatggttaaggttattatagaaaaaacatacaaaatttcattaaaaataacaaaatttatttgatttcttggt 3657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27143158 - 27143239
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaaca---cacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    ||||||||||||||||||||  |||||||||||| |   |||  | |||| ||||||||||||||||||||||| |||||||    
T  27143158 tgaaataataaatgattaagaatattatagaaaaaaactcacggaatttcctcaaaaataacaaaatttatttgatttcttg 27143239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 31003935 - 31004012
Alignment:
Q  3 aaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||| |||||||||||||||  |||| ||||||| |||||| ||||||   |||||||||||| |||||||||    
T  31003935 aaataataaatggttaagggtattatagaaaaaatacacatactttcattaaaaat---aaaatttatttgatttcttggt 31004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 9589631 - 9589667
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagg 9589667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18396825 - 18396754
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttattt 70  Q
    ||||||||| |||| ||||   ||||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  18396825 tgaaataatgaatggttaaatatattatagaaaaaccacacataatttcataaaaaataacaaaatttattt 18396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25929241 - 25929173
Alignment:
Q  2 gaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttattt 70  Q
    ||||||||||||| |||||| |||  ||||||| ||||| | ||| ||||||| |||||||||||||||    
T  25929241 gaaataataaatggttaaggatatcgtagaaaaaacacagaatttaatcaaaattaacaaaatttattt 25929173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 40564241 - 40564293
Alignment:
Q  63 atttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttg 115  Q
    ||||||||||||||||||||| ||| |||| |||||||| ||||| |||||||    
T  40564241 atttatttggtttcttggttactgcgatttttccaaaatggacatatattttg 40564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 44227889 - 44227853
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagg 44227853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 44228228 - 44228276
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    ||||||||  |||||||||||||||| |||||||||||||||| |||||    
T  44228228 cttggttacagcaatttctccaaaatggacatgtattttgaaatggagg 44228276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 14351954 - 14351989
Alignment:
Q  46 tcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||||||||||||||||| |||||||||    
T  14351954 tcatcaaaaataacaaaatttatttgttttcttggt 14351989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 1168414 - 1168369
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacgg 121  Q
    |||||||| |||||||||| |||||  |||||||||||||||||||    
T  1168414 cttggttactgcaatttcttcaaaaacgacatgtattttgaaacgg 1168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 21623680 - 21623756
Alignment:
Q  5 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 82  Q
    |||||||||  |||||||||||| |||||| | ||| | ||||||||||| |||||||||||||  | ||||||||||    
T  21623680 ataataaatatttaagggtattaaagaaaa-agacacactttcatcaaaagtaacaaaatttatcggttttcttggtt 21623756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 3943763 - 3943799
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagg 3943799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24876692 - 24876633
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaa 61  Q
    |||||| ||||||| | || |||||||||||||| ||||||| | ||||||||||||||||    
T  24876692 tgaaatgataaatggtcaaaggtattatagaaaa-acacataatatcatcaaaaataacaa 24876633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 41959809 - 41959845
Alignment:
Q  88 aatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagg 41959845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 3519038 - 3518913
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3519038 tgaaataataaattattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 3518939  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  3518938 aatggacatgtattttgaaacggagg 3518913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 23366919 - 23366794
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23366919 tgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 23366820  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  23366819 aatggacatgtattttgaaacggagg 23366794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 39938300 - 39938175
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39938300 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 39938201  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| | ||||||||||||||||||||    
T  39938200 aatggtcatgtattttgaaacggagg 39938175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 1102633 - 1102508
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1102633 tgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctccaa 1102534  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    ||| ||||||||||||||||||||||    
T  1102533 aatggacatgtattttgaaacggagg 1102508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 37673887 - 37674009
Alignment:
Q  4 aataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaat 101  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37673887 aataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaat 37673986  T
Q  102 agacatgtattttgaaacggagg 124  Q
      |||||||||||||||||||||    
T  37673987 gaacatgtattttgaaacggagg 37674009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 12969888 - 12970011
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| ||||||||||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12969888 aaataataaatggttaagggtattatagaaaatatacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 12969987  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    | ||||||||||||||||||||||    
T  12969988 tggacatgtattttgaaacggagg 12970011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 1646417 - 1646317
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  1646417 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttagtttcttggttgctgcaatttctccaaaa 1646318  T
Q  101 t 101  Q
    |    
T  1646317 t 1646317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22388282 - 22388335
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaa 52  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22388282 tgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaa 22388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 34224378 - 34224426
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  34224378 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 34224426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 39562037 - 39562104
Alignment:
Q  4 aataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttg 71  Q
    ||||||||||| |||||||||||| | |||||| | ||| |||| |||||||||||||||||||||||    
T  39562037 aataataaatggttaagggtattagaaaaaacaaaaataatttcttcaaaaataacaaaatttatttg 39562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35179097 - 35179164
Alignment:
Q  16 ttaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||| ||||||||||||  |||||| | |||||||||||||||||||||||||||  |||||||||    
T  35179097 ttaaggttattatagaaaaaacacacaaaatttcatcaaaaataacaaaatttatttcatttcttggt 35179164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 19976459 - 19976380
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaaca-cacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||||||||||   |||||||||||||||||| | |||||| ||| ||||||| || ||||||||||||| |||||||||    
T  19976459 aaataataaataggtaagggtattatagaaaaaaacacataattttatcaaaagtaccaaaatttatttgatttcttggt 19976380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14779907 - 14779838
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttattt 70  Q
    ||||||||||||||| ||||  |||||||||||| ||||| ||  ||||||||||||||| |||||||||||    
T  14779907 tgaaataataaatgagtaag--tattatagaaaaaacacaaataatttcatcaaaaataaaaaaatttattt 14779838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34242105 - 34242040
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaattt 66  Q
    ||||||||||||||  ||||||| ||| | |||| ||||| | |||||||||||||||||||||||    
T  34242105 tgaaataataaatgggtaagggtgttacaaaaaaaacacagaatttcatcaaaaataacaaaattt 34242040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 1002922 - 1002997
Alignment:
Q  44 tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaac 119  Q
    ||||||||||||||| |||||||||||| |||||| ||  ||| ||| ||  |||||  |||||||||||||||||    
T  1002922 tttcatcaaaaataataaaatttatttgatttcttagtatgtgtaatatcctcaaaagcgacatgtattttgaaac 1002997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18078186 - 18078104
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 81  Q
    |||| ||||||||| | ||| |||||||||||||  |||| | |  ||||||||||||||||||||||||||| ||| |||||    
T  18078186 tgaattaataaatggtcaagagtattatagaaaatccacaaaaaaattcatcaaaaataacaaaatttatttgattttttggt 18078104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 32840354 - 32840401
Alignment:
Q  31 aaaacacacatattttcatcaaaaataacaaaatttatttggtttctt 78  Q
    |||| ||||| | |||||||||||||||||||||||||||| ||||||    
T  32840354 aaaaaacacagaatttcatcaaaaataacaaaatttatttgatttctt 32840401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4917892 - 4917839
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaa 54  Q
    ||||||||||||| ||||||  |||||||||||| ||||||| ||| |||||||    
T  4917892 tgaaataataaataattaagattattatagaaaaaacacataattttatcaaaa 4917839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 14117753 - 14117814
Alignment:
Q  5 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaattt 66  Q
    |||||||||  ||||| ||||||||| ||| | ||||| ||||||||||| |||||||||||    
T  14117753 ataataaatacttaagagtattataggaaaaagacataatttcatcaaaagtaacaaaattt 14117814  T

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Target: scaffold0054 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 45582 - 45459
Alignment:
Q  3 aaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    |||||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45582 aaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 45483  T
Q  101 tagacatgtattttgaaacggagg 124  Q
    |  |||||||||||||||||||||    
T  45482 tgaacatgtattttgaaacggagg 45459  T

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Target: scaffold0062 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 412 - 525
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||| ||| ||| ||||||||| ||||||    
T  412 tgaaataataaatgattaagggtattataaaaaacacacataattttatcaaaaataacaaaatttatttgattttttgattactgcaatttcgccaaaa 511  T
Q  101 tagacatgtatttt 114  Q
    |  |||||||||||    
T  512 tgaacatgtatttt 525  T

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Target: scaffold1770 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 292 - 175
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaa 98  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||        ||||| ||||||||||||||    
T  292 tgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttattt--------ggttactgcaatttctccaa 201  T
Q  99 aatagacatgtattttgaaacggagg 124  Q
    | | || |||||||||||||||||||    
T  200 agtggatatgtattttgaaacggagg 175  T

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Target: scaffold0056 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 70954 - 70874
Alignment:
Q  1 tgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttg 79  Q
    |||||||||||||| |||||||| ||| ||||||  |||||| | |||||||||||||||||||||||||||| |||||||    
T  70954 tgaaataataaatggttaagggtgttacagaaaaaacacacagaatttcatcaaaaataacaaaatttatttgatttcttg 70874  T

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Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 23520 - 23472
Alignment:
Q  76 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  23520 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 23472  T

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Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 65310 - 65375
Alignment:
Q  1 tgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaa 63  Q
    |||||||||||||| |||||||||||||||   |||||||| ||| ||||||||||||||| ||||    
T  65310 tgaaataataaatggttaagggtattatagaaaaaaacacatataatttcatcaaaaataataaaa 65375  T

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