View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_12 (Length: 457)
Name: NF2562_low_12
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 2514848 - 2514406
Alignment:
| Q |
11 |
caaaggtggttagggcacaacaatcataatggtagcacattttcattgacaagcatccattg------------gaagcacgagaacaaaattgccagtt |
98 |
Q |
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| T |
2514848 |
caaaggtagttagggcacaacaatcataatggtagcacattttcattgacaagcatccattgtattattgattggaagcacgagaacaaaattgccagtt |
2514749 |
T |
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| Q |
99 |
gtggaagtgacattacattatacactacgaaattttcacttactgatttgttaatttaacataaattttgtactttgttttgttgattgaaacccttttt |
198 |
Q |
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| T |
2514748 |
gtggaagtgacattacgttatacactacgaaattttcacttactgatttgttaatttaacataaattttgtactttgttttgttgattgaaacccttttt |
2514649 |
T |
|
| Q |
199 |
atagactttgaaaccgtagcatttgttttcactaaccagtgtagtggctaaaagaagatgcatgtaggaccataatagcacttattaatgcttttcttat |
298 |
Q |
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| T |
2514648 |
atagactttgaaaccgtagcatttgttttcactaaccagtgtagtggctaaaagaagatgcatgtaggaccataatagcacttattaatgcttttcttat |
2514549 |
T |
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| Q |
299 |
cacaaaaatatagctgtgatctctcatctcaagcacaatattgagctggttttaatttcaactttctgaaacttgtgcaattgaaagggactattaggta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2514548 |
cacaaaaatatagctgtgatctctcatctcaagcacaatattgagctggttttaatttcaactttctgaaacttgtgcaattgaaagggactattaggta |
2514449 |
T |
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| Q |
399 |
gatatgtcagaagccataataagggtgtgtgaactgttacaaa |
441 |
Q |
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| T |
2514448 |
gatatgtcagaagccataataagggtgtgtgaactgttacaaa |
2514406 |
T |
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