View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_15 (Length: 453)
Name: NF2562_low_15
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 29396974 - 29397325
Alignment:
| Q |
7 |
acatcatcatcatcgattaacaaacaaaactctcatatggattaattaatcctcaattaacagaaaatcacacacaaatcaaatcaccgattcgattcga |
106 |
Q |
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| T |
29396974 |
acatcatcatcatcgattaacaaagaaaactctcatatggattaattaatcctcaattaacagaaaatcacacacaaatcaaatcaccgattcgattcga |
29397073 |
T |
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| Q |
107 |
attcttcactttccataacctaagatccatttcgcatgttcttcgatcttcgatcggttccgatcgaacaaaggctttcccaatttcgatctgaaatcac |
206 |
Q |
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| T |
29397074 |
attcttcactttccataacctaagatccatttcgcatgttcttcgatcttcgatcggttccgatcgaacaaaggctttcccaatttcgatctgaaatcac |
29397173 |
T |
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| Q |
207 |
tttcgtaacaattagggtttcaacaatcacagaatgatgtcttcaatcttctttctacgcaatttgattccgtttcacggtggatcttcttttcatcgtt |
306 |
Q |
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| T |
29397174 |
ttttgtaacaattagtgtttcaacaatcacagaatgatgtcttcaatcttctttctacgcaatttgattccgtttcacggtggatcttcttttcatcgtt |
29397273 |
T |
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| Q |
307 |
ttaaacatcttgaaaaaagtgataggcgtggtaatcttagttaaccttccgc |
358 |
Q |
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| T |
29397274 |
ttaaacatcttgaaaaaagtgataggcgtggtaatcttagttaaccttccgc |
29397325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 40175342 - 40175278
Alignment:
| Q |
287 |
tggatcttcttttcatcgttttaaacatcttgaaaaaagtgataggcgtggtaatcttagttaac |
351 |
Q |
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| T |
40175342 |
tggatcttcttctcatcgtttgaaacctcttgaaaaaagtgatagacgtggtaatcttagttaac |
40175278 |
T |
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