View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_16 (Length: 421)
Name: NF2562_low_16
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 8923720 - 8923523
Alignment:
| Q |
1 |
ttatagtttattacgatagtgataggtaaataccggtagtaatttaagaaaatagaagtgtttgaacttgcatgtaactatatgtgtcgttgccgtgtta |
100 |
Q |
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| T |
8923720 |
ttatagtttattacgatagtgataggtaaataacggtaataatttaagaaaatagaagtgattgaacttgcatgtaactatatgtgtcgttgccgtgtta |
8923621 |
T |
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| Q |
101 |
atattggacactagacgtgtcttcgatctgaattgatttactgcataagttggacgatcttttttatagcatatttatttgaagctatgattattctg |
198 |
Q |
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| T |
8923620 |
atattggacactagacgtgtcttcgatctgaattgatttactgcataagttggacgatcttttttatagcatatttatttgaagctatgattattctg |
8923523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 208 - 393
Target Start/End: Complemental strand, 8923017 - 8922832
Alignment:
| Q |
208 |
gacatttttgttgatatgattcatagatatttttcctatggtgtgttttgagttttgggaaatatggcatgatggcaggtgttgaaagataccggttttc |
307 |
Q |
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| T |
8923017 |
gacatttttgttgatatgattcatagatatttttcctatggtgtgttttgagttttgggaaatatggcatgatggcaggtgttgaaagatacgggttttc |
8922918 |
T |
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| Q |
308 |
atggtgtagtttattcagtgttgtcaatcacggatcacagcaaatagcgggttttttaaattcaactacgctattgtggtataatg |
393 |
Q |
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| T |
8922917 |
atgatgtagtttattcagtgttgtcaatcacggatcacagcaaatagcgggttttttaaattcaactacgctattgtggtataatg |
8922832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 18679523 - 18679491
Alignment:
| Q |
322 |
tcagtgttgtcaatcacggatcacagcaaatag |
354 |
Q |
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| T |
18679523 |
tcagtgttgtcaatcacggatcacagaaaatag |
18679491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 4542832 - 4542776
Alignment:
| Q |
325 |
gtgttgtcaatcacggatcacagcaaatagcgggttttttaaattcaactacgctat |
381 |
Q |
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| T |
4542832 |
gtgttgtcaatcgcggatctcagaaaatagtggtttgtttaaattccactacgctat |
4542776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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