View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_low_17 (Length: 421)

Name: NF2562_low_17
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_low_17
NF2562_low_17
[»] chr8 (5 HSPs)
chr8 (239-407)||(2095834-2096003)
chr8 (4-182)||(2095622-2095806)
chr8 (354-407)||(11183583-11183636)
chr8 (351-397)||(3254260-3254306)
chr8 (354-396)||(30259152-30259194)
[»] chr3 (3 HSPs)
chr3 (351-396)||(30923888-30923933)
chr3 (354-396)||(41452561-41452603)
chr3 (354-396)||(42039200-42039242)
[»] chr5 (5 HSPs)
chr5 (50-158)||(14225909-14226017)
chr5 (352-397)||(14295542-14295587)
chr5 (355-392)||(3504783-3504820)
chr5 (355-396)||(10272421-10272462)
chr5 (351-396)||(17369429-17369474)
[»] chr4 (3 HSPs)
chr4 (354-395)||(30207562-30207603)
chr4 (353-392)||(22684515-22684554)
chr4 (354-396)||(50800020-50800062)
[»] chr6 (2 HSPs)
chr6 (354-402)||(7785728-7785776)
chr6 (354-390)||(3155213-3155249)
[»] chr7 (2 HSPs)
chr7 (354-396)||(12234879-12234921)
chr7 (351-396)||(12242279-12242324)
[»] chr1 (2 HSPs)
chr1 (351-396)||(15581289-15581334)
chr1 (354-398)||(45205106-45205150)
[»] chr2 (2 HSPs)
chr2 (357-397)||(787373-787413)
chr2 (354-402)||(33776896-33776944)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 239 - 407
Target Start/End: Original strand, 2095834 - 2096003
Alignment:
Q  239 catccctgtcaaagcctggcagcatacaagggggcgagactcctactcctacacatctgtttccggcatctacttcttgttggttgctgggttgaccta- 337  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  || ||||| || ||||||||||| |||||||||||||     
T  2095834 catccctgtcaaagtctggcagcatacaagggggcgagactcctacttctacacatctgtcgccagcatcgacctcttgttggttactgggttgacctac 2095933  T
Q  338 gatccaacaccacatagaaataagctgaaaacagcttacagacatatcataagctgtttttgtaacctct 407  Q
     ||||||||||||||||||| ||||||||||||||| |  ||||||||||||| ||||||||||| ||||    
T  2095934 aatccaacaccacatagaaaaaagctgaaaacagctcatggacatatcataaggtgtttttgtaagctct 2096003  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 2095622 - 2095806
Alignment:
Q  4 acactaaatctctccatgaggaccctaccactagccataagaccaacaaactgattaaa------atttatcgaggcgatattatgcaaagctgtggata 97  Q
    ||||||||||||||||| ||||||||||||| | | ||||||||||||||||| |||||      |||||||||||||| || |||||||||||  ||||    
T  2095622 acactaaatctctccatcaggaccctaccacgacctataagaccaacaaactggttaaagatttgatttatcgaggcgaaatcatgcaaagctgaagata 2095721  T
Q  98 aatttagcctcaataaaatcttacaccacaccaaattatttgatggacattcaaaaaacaaatgtgaaatttctagcgagcatcc 182  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||  ||||||||| |||||||| ||||| |||||||    
T  2095722 aatttagccataataaaatcttacaccacaccaaattattttatggacattagaaaaacaaaggtgaaattcctagcaagcatcc 2095806  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 11183583 - 11183636
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgtttttgtaacctct 407  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||    
T  11183583 gaaataagctgaaaacagcttatagacatatcataagttgtttttataagctct 11183636  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 3254260 - 3254306
Alignment:
Q  351 atagaaataagctgaaaacagcttacagacatatcataagctgtttt 397  Q
    |||||||||||||||||||||||||   |||| ||||||||||||||    
T  3254260 atagaaataagctgaaaacagcttatgaacatgtcataagctgtttt 3254306  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 30259152 - 30259194
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||    
T  30259152 gaaataaactgaaaacaacttatagacatatcataagctgttt 30259194  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 30923933 - 30923888
Alignment:
Q  351 atagaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  30923933 atagaaataagctgaaaacagcttatagacatgtcataagctgttt 30923888  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 41452561 - 41452603
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    |||||||| ||||||||||||| |||||||||||||| |||||    
T  41452561 gaaataaggtgaaaacagcttatagacatatcataagttgttt 41452603  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 42039200 - 42039242
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  42039200 gaaataagctgaaaacaacttacagccatgtcataagctgttt 42039242  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 14225909 - 14226017
Alignment:
Q  50 caaactgattaaaatttatcgaggcgatattatgcaaagctgtggataaatttagcctcaataaaatcttacaccacaccaaattatttgatggacattc 149  Q
    ||||||| |||| ||||||| |||| |||||||||||||  |  ||||||||| ||| ||||||| ||||| ||||||| |||||| || |||  ||||     
T  14225909 caaactggttaagatttatcaaggcaatattatgcaaagtagaagataaattttgccacaataaattcttaaaccacacaaaattagttaatgagcatta 14226008  T
Q  150 aaaaaacaa 158  Q
    |||||||||    
T  14226009 aaaaaacaa 14226017  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 14295542 - 14295587
Alignment:
Q  352 tagaaataagctgaaaacagcttacagacatatcataagctgtttt 397  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||    
T  14295542 tagaagtaagctgaaaacagcttatcgacatatcataagctgtttt 14295587  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 3504783 - 3504820
Alignment:
Q  355 aaataagctgaaaacagcttacagacatatcataagct 392  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  3504783 aaataagctgaaaacagcttacaaacatgtcataagct 3504820  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 10272462 - 10272421
Alignment:
Q  355 aaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    |||||||||||||||| ||||||||||| ||||||| |||||    
T  10272462 aaataagctgaaaacaacttacagacatgtcataagttgttt 10272421  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 17369474 - 17369429
Alignment:
Q  351 atagaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    |||||||||| ||||||||| |||| |||||| |||||||||||||    
T  17369474 atagaaataatctgaaaacaacttatagacatgtcataagctgttt 17369429  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 30207603 - 30207562
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgtt 395  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  30207603 gaaataagctgaaaacagcttacagacatgtcatatgctgtt 30207562  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 22684554 - 22684515
Alignment:
Q  353 agaaataagctgaaaacagcttacagacatatcataagct 392  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  22684554 agaaataagctgaaaacagcttatggacatatcataagct 22684515  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 50800062 - 50800020
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    |||||||||||||||||||||| |||||| ||||||| |||||    
T  50800062 gaaataagctgaaaacagcttatagacatgtcataagttgttt 50800020  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 7785776 - 7785728
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgtttttgtaa 402  Q
    ||||||||||||||||| |||| |||||| ||||||||||||| |||||    
T  7785776 gaaataagctgaaaacaacttatagacatgtcataagctgtttctgtaa 7785728  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 3155213 - 3155249
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataag 390  Q
    |||||||||||||||||||||| |||||| |||||||    
T  3155213 gaaataagctgaaaacagcttatagacatgtcataag 3155249  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 12234921 - 12234879
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    |||||||||||||||||||||| |||||| ||||||| |||||    
T  12234921 gaaataagctgaaaacagcttatagacatgtcataagttgttt 12234879  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 12242279 - 12242324
Alignment:
Q  351 atagaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    |||||||||||||||||||| |||| || |||||||||||| ||||    
T  12242279 atagaaataagctgaaaacaacttataggcatatcataagccgttt 12242324  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 15581289 - 15581334
Alignment:
Q  351 atagaaataagctgaaaacagcttacagacatatcataagctgttt 396  Q
    ||||||||| ||||||||||||||| |||||| ||||||| |||||    
T  15581289 atagaaataggctgaaaacagcttatagacatgtcataagttgttt 15581334  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 45205106 - 45205150
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgttttt 398  Q
    ||||||||||||||||| ||||  ||||||||||||| |||||||    
T  45205106 gaaataagctgaaaacaacttagggacatatcataagttgttttt 45205150  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 787373 - 787413
Alignment:
Q  357 ataagctgaaaacagcttacagacatatcataagctgtttt 397  Q
    |||||||||||||||||||  ||||| ||||||||||||||    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgtttt 787413  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 33776944 - 33776896
Alignment:
Q  354 gaaataagctgaaaacagcttacagacatatcataagctgtttttgtaa 402  Q
    |||||||| ||||||||||||||| |||||  ||||||| |||||||||    
T  33776944 gaaataagttgaaaacagcttacaaacatacgataagctatttttgtaa 33776896  T

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