View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_18 (Length: 417)
Name: NF2562_low_18
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 49271704 - 49272090
Alignment:
| Q |
18 |
acttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaacca |
117 |
Q |
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| T |
49271704 |
acttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaacaagatccccagctgcaccaccagtgctcacaaacca |
49271803 |
T |
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| Q |
118 |
aaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatg |
217 |
Q |
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| T |
49271804 |
aaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatg |
49271903 |
T |
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| Q |
218 |
taatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatg |
317 |
Q |
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| T |
49271904 |
taatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtgtgtcctaatg |
49272003 |
T |
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| Q |
318 |
taatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
404 |
Q |
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| T |
49272004 |
taatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
49272090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 404
Target Start/End: Original strand, 49277625 - 49278013
Alignment:
| Q |
22 |
aaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaac |
121 |
Q |
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| T |
49277625 |
aaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaaaggttcccaggaaaaccaccggtgctcacaaaccaaaac |
49277724 |
T |
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| Q |
122 |
ccagacccaa------cctttaaaagcctccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaa |
215 |
Q |
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| T |
49277725 |
ctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactacccaatattggaatctcaacggtgagatcagtgagagttggaa |
49277824 |
T |
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| Q |
216 |
tgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaa |
315 |
Q |
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| T |
49277825 |
tgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagggttacggataacatcaagagggcatgttttgtttcttgtttgtcctaa |
49277924 |
T |
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| Q |
316 |
tgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
404 |
Q |
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| T |
49277925 |
tgttatgcctccattgtcagcccaaagtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
49278013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 306
Target Start/End: Original strand, 49269292 - 49269544
Alignment:
| Q |
54 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
153 |
Q |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
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| Q |
154 |
tggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtg |
253 |
Q |
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| T |
49269392 |
tgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgag |
49269491 |
T |
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| Q |
254 |
ccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
306 |
Q |
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| T |
49269492 |
ccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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