View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_23 (Length: 386)
Name: NF2562_low_23
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 10360206 - 10360578
Alignment:
| Q |
1 |
tagaacccaaatccctcactttaaaaactaaacttgtgaacaggatttaaagtacttacaattatgttgtgcacaatgcaaagagaccctccgattcgta |
100 |
Q |
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| T |
10360206 |
tagaacccaaatccctcactttcaaaactcaacttgtgaacaggctttaaagtacttacaattatgttgtgcacaatgtaaagagaccctctgattctta |
10360305 |
T |
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| Q |
101 |
gatagaggggcgcaagtaatccaaagtttggttaggaggtaattaaagtctgaccaaaagttgtttccacgggaatcaaacttgggttttcctgaacgat |
200 |
Q |
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| T |
10360306 |
gacaaaggggcgcaagtaatccaaagtttagttaggaggtaattaaagtctgatcaaaagttgtttccacaggaatcaaacttgggttttcctgaacgat |
10360405 |
T |
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| Q |
201 |
ttgtctaaggaagagctcattgtctactttgaatctgatcacttgatttgtaagcaatatacaatttaattaacaatgtttaatttctcccttcatttaa |
300 |
Q |
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| T |
10360406 |
ttgtctaaggaggagctcattgactactttgaatctgatcacttggtttgtaagcaatatacaatttaattaacaatgtttaatttctcccttcatttaa |
10360505 |
T |
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| Q |
301 |
cgtcctgattcatatttatatgtttaccgctattttgtcctcctattgagagcactatgcatcactttgcttc |
373 |
Q |
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| T |
10360506 |
cgtcctgattcatatttatatgtttaccgctattttgtgctcctattgagagcactatgcatcactttgcttc |
10360578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 29828784 - 29828748
Alignment:
| Q |
124 |
aagtttggttaggaggtaattaaagtctgaccaaaag |
160 |
Q |
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| T |
29828784 |
aagtttggttaggaggtaagtaaagtctgaccgaaag |
29828748 |
T |
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