View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_low_25 (Length: 377)

Name: NF2562_low_25
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_low_25
NF2562_low_25
[»] chr2 (2 HSPs)
chr2 (1-241)||(7858867-7859103)
chr2 (243-368)||(7859142-7859267)
[»] chr3 (3 HSPs)
chr3 (106-192)||(20631032-20631118)
chr3 (309-361)||(20628864-20628916)
chr3 (143-241)||(3324403-3324501)
[»] chr8 (4 HSPs)
chr8 (260-361)||(10380394-10380495)
chr8 (161-217)||(29281318-29281374)
chr8 (105-196)||(10380202-10380292)
chr8 (143-196)||(26300472-26300525)
[»] scaffold0842 (1 HSPs)
scaffold0842 (143-222)||(4068-4147)
[»] chr7 (2 HSPs)
chr7 (143-222)||(18412792-18412871)
chr7 (148-222)||(21645164-21645238)
[»] chr1 (2 HSPs)
chr1 (143-222)||(19359712-19359791)
chr1 (143-241)||(47099673-47099771)
[»] chr4 (3 HSPs)
chr4 (291-349)||(3517283-3517341)
chr4 (314-362)||(33175501-33175549)
chr4 (314-362)||(33176175-33176223)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7858867 - 7859103
Alignment:
Q  1 agaaattgcatggaatcaccattgtctccttactcgggataatccctctcgtaatgcttggttttgtggtagttgaaatagttatacttcgacttgtcgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  7858867 agaaattgcatggaatcaccattgtctccttactcgggataatccctctcgtaatggttggttttgtggtagttaaaatagttatacttcgacttgtcgt 7858966  T
Q  101 cagtcaccctttaagtttccatggtttcttctactcccacctctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggatt 200  Q
     |    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7858967 ta----ccctttaagtttccatggtttcttctactcccacctctccctcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggact 7859062  T
Q  201 agtttaactccttggttctcaacgtcatttggacttcctcc 241  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  7859063 agtttaactcattggttttcaacgtcatttggacttcctcc 7859103  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 243 - 368
Target Start/End: Original strand, 7859142 - 7859267
Alignment:
Q  243 ttgaaatgctcataaattctacgtaatgcacataataagggtatatttttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattt 342  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  7859142 ttgaaatgctcataaattctacgtaatgcacagaataagggtatatttttgtcttcatcctcttttttcatttcaatgttcatcaaatcatcaaagattt 7859241  T
Q  343 tgttgaattccgtcaattgttctgtg 368  Q
    ||||||||||||||||||||| ||||    
T  7859242 tgttgaattccgtcaattgttttgtg 7859267  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 20631118 - 20631032
Alignment:
Q  106 accctttaagtttccatggtttcttctactcccacctctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtc 192  Q
    ||||||| |||||||||| |||| ||||||||||| ||||| |||||  |||||||||||||||| | ||||||||| |||||||||    
T  20631118 accctttgagtttccatgatttcctctactcccacatctccctcttgagacactcaagccttcaccactatcatcaaccttcaagtc 20631032  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 20628916 - 20628864
Alignment:
Q  309 ttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattg 361  Q
    |||| ||||||||||| |||||||| || |||||||||||| |||||||||||    
T  20628916 ttcacttcaatgttcaacaaatcatcaatgattttgttgaactccgtcaattg 20628864  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 3324501 - 3324403
Alignment:
Q  143 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaacgtcatttggacttcctcc 241  Q
    |||| |||||||||| |||||||||||| |   ||||||| ||||||||||||| | | | | || |||||||||||||||| |  |||||| ||||||    
T  3324501 ctccctcttgcaacattcaagccttcaccaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaacgcctcttggacctcctcc 3324403  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 10380394 - 10380495
Alignment:
Q  260 tctacgtaatgcacataataagggtatatttttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaat 359  Q
    |||| |||||||||| |||||| | | ||  |||||||| |||||  | || | ||||||||||| |||||||| ||||||||||||||||| || ||||    
T  10380394 tctaagtaatgcacacaataagagcagatcattgtcttcgtccttaatgtttacttcaatgttcaccaaatcatcaaagattttgttgaattgcgccaat 10380493  T
Q  360 tg 361  Q
    ||    
T  10380494 tg 10380495  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 29281374 - 29281318
Alignment:
Q  161 aagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggtt 217  Q
    |||||||||| ||||||||||||||||||||||||| | ||  ||||||| ||||||    
T  29281374 aagccttcaccattatcatcaaacttcaagtccttgaactatgttaactctttggtt 29281318  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 10380202 - 10380292
Alignment:
Q  105 caccctttaagtttccatggtttcttctactcccacctctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttg 196  Q
    |||||||| |||||||| | |||| |||||||| ||| || | |||||  ||| |||||||||||| | ||||||||||||||||| |||||    
T  10380202 caccctttgagtttccacgatttcctctactcc-accacttcctcttgagacattcaagccttcacgagtatcatcaaacttcaagaccttg 10380292  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 26300472 - 26300525
Alignment:
Q  143 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttg 196  Q
    |||| |||||||||| ||||||||||||||   ||||||| |||||||||||||    
T  26300472 ctccctcttgcaacattcaagccttcactaccttcatcaatcttcaagtccttg 26300525  T

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Target: scaffold0842 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 4147 - 4068
Alignment:
Q  143 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 222  Q
    |||| |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  4147 ctccctcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 4068  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 18412792 - 18412871
Alignment:
Q  143 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 222  Q
    |||| |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  18412792 ctccctcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 18412871  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 21645164 - 21645238
Alignment:
Q  148 tcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 222  Q
    |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  21645164 tcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 21645238  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 19359791 - 19359712
Alignment:
Q  143 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 222  Q
    |||| |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  19359791 ctccctcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 19359712  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 47099771 - 47099673
Alignment:
Q  143 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaacgtcatttggacttcctcc 241  Q
    |||| |||||||||| |||||||||||| |   || |||| ||||||||||||| | | | |||| |||||||||||||| |||  |||||| ||||||    
T  47099771 ctccctcttgcaacattcaagccttcaccaccttcttcaaccttcaagtccttgaacttggttaattccttggttctcaaagtcgcttggacctcctcc 47099673  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 3517341 - 3517283
Alignment:
Q  291 ttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaa 349  Q
    |||||||||||||   |||||| ||||||||||| |||||||| || ||||||||||||    
T  3517341 ttgtcttcatcctaaattttcacttcaatgttcaccaaatcatcaaggattttgttgaa 3517283  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 33175549 - 33175501
Alignment:
Q  314 ttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgt 362  Q
    ||||||||| | |||||||| ||  ||||||||||||||||||||||||    
T  33175549 ttcaatgtttaccaaatcatcaataattttgttgaattccgtcaattgt 33175501  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 33176223 - 33176175
Alignment:
Q  314 ttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgt 362  Q
    ||||||||| | |||||||| ||  ||||||||||||||||||||||||    
T  33176223 ttcaatgtttaccaaatcatcaataattttgttgaattccgtcaattgt 33176175  T

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