View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2562_low_34 (Length: 336)
Name: NF2562_low_34
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 40627674 - 40627353
Alignment:
| Q |
1 |
ataaatcagatcatgcatctaactttttctaatgacataaatcatattagttatattgactttcattattcacaacagattgaccgccacaagagaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40627674 |
ataaatcagatcatgcatctaactttttctaatgacataaatcatattagttatattgactttcattattcacaacagattgactgccacaagagaacca |
40627575 |
T |
|
| Q |
101 |
aaactttaatattagtgttggattatgagggggt-tttggaaatcattaccttgaacttagagcaatcacacatgtggattagacctattattttaaccc |
199 |
Q |
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||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
40627574 |
aaactttaataccagtgttagattatgagggggggtttggaaatcattacattgaactttgagcaatcacacatgtggattagacatattattttaacct |
40627475 |
T |
|
| Q |
200 |
aaaatcttaagacattaaatatatgagttatgtatgttattatatgaatatactttttcaatctaatgtgagactcttaagattcgtttgattcataaaa |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40627474 |
aaaatcttaagacattagatatatgagttatgtatgttattatatgaatacactttttcaatctaatgtgagactcttaaggttcgtttgattcataaaa |
40627375 |
T |
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| Q |
300 |
gagtaagtgttggacaaaacaa |
321 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40627374 |
gagtaagtgttggacaaaacaa |
40627353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 3958687 - 3958722
Alignment:
| Q |
189 |
tattttaacccaaaatcttaagacattaaatatatg |
224 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
3958687 |
tattttaatccaaaatcttaagacattaaatatatg |
3958722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 14002142 - 14002110
Alignment:
| Q |
193 |
ttaacccaaaatcttaagacattaaatatatga |
225 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
14002142 |
ttaatccaaaatcttaagacattaaatatatga |
14002110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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