View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_42 (Length: 299)
Name: NF2562_low_42
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 53202355 - 53202187
Alignment:
| Q |
20 |
taatacaggcgatcacggccacgtagattgttgtaaggttgctaacaactgcatctgatagagccataactcaaacaaagagagtggagtgtaatggatg |
119 |
Q |
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| T |
53202355 |
taatacaggcgatcacggccacgtagattgttgtaaggttgctaacaactgcatctgatagagccataactcaaacaaagagagtggagtgtaatggatg |
53202256 |
T |
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| Q |
120 |
aaggttttttgaggcgttatatttatataataagtcgatgtttttattgctttgtgtaatgccacactg |
188 |
Q |
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| T |
53202255 |
aaggttttttgaggcgttatatttatataatatgtcgatgtttttattgctttgtgtaatgccacactg |
53202187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 53202130 - 53202094
Alignment:
| Q |
253 |
ttgatcaaatcatgaaatgaccaaagacacgcctatg |
289 |
Q |
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| T |
53202130 |
ttgatcaaatcatgaaatgaccaaagacacgcctatg |
53202094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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