View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_low_52 (Length: 257)

Name: NF2562_low_52
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_low_52
NF2562_low_52
[»] chr5 (28 HSPs)
chr5 (54-250)||(7736845-7737042)
chr5 (1-55)||(12806853-12806907)
chr5 (1-55)||(30720492-30720546)
chr5 (1-55)||(36561099-36561153)
chr5 (1-55)||(40886610-40886664)
chr5 (4-55)||(25683229-25683280)
chr5 (1-55)||(10285058-10285112)
chr5 (1-55)||(23097724-23097778)
chr5 (1-55)||(25773872-25773926)
chr5 (117-240)||(42086311-42086435)
chr5 (138-240)||(12081892-12081994)
chr5 (3-48)||(11319781-11319826)
chr5 (3-55)||(734339-734391)
chr5 (117-240)||(5731919-5732043)
chr5 (176-240)||(21149718-21149782)
chr5 (160-247)||(24875322-24875409)
chr5 (176-244)||(25467390-25467458)
chr5 (3-55)||(37900623-37900675)
chr5 (1-53)||(16983480-16983532)
chr5 (4-55)||(1056625-1056676)
chr5 (138-240)||(14588638-14588740)
chr5 (3-49)||(39071107-39071153)
chr5 (127-240)||(7866565-7866678)
chr5 (117-225)||(9805003-9805112)
chr5 (127-240)||(19572708-19572821)
chr5 (17-58)||(30720731-30720772)
chr5 (3-55)||(26168133-26168185)
chr5 (144-244)||(37263221-37263320)
[»] chr8 (25 HSPs)
chr8 (1-59)||(40918727-40918785)
chr8 (1-55)||(7147136-7147190)
chr8 (1-55)||(30999524-30999578)
chr8 (1-55)||(40058303-40058357)
chr8 (1-55)||(43275399-43275453)
chr8 (4-55)||(11646325-11646376)
chr8 (4-55)||(36068306-36068357)
chr8 (1-56)||(37345794-37345849)
chr8 (1-55)||(2539930-2539984)
chr8 (1-55)||(11174223-11174277)
chr8 (4-55)||(3585677-3585728)
chr8 (1-55)||(27035218-27035272)
chr8 (176-240)||(6100459-6100523)
chr8 (4-55)||(28568144-28568195)
chr8 (4-55)||(28575737-28575788)
chr8 (4-55)||(35866839-35866890)
chr8 (3-58)||(45400767-45400822)
chr8 (176-233)||(18374004-18374061)
chr8 (1-40)||(20546308-20546347)
chr8 (17-59)||(45278716-45278758)
chr8 (117-245)||(14666070-14666199)
chr8 (117-240)||(10535403-10535526)
chr8 (176-240)||(10927593-10927657)
chr8 (117-244)||(14846559-14846686)
chr8 (17-57)||(27034995-27035035)
[»] chr4 (36 HSPs)
chr4 (119-244)||(295534-295659)
chr4 (1-57)||(12071783-12071839)
chr4 (1-55)||(14261267-14261321)
chr4 (1-55)||(21310644-21310698)
chr4 (1-55)||(24706247-24706301)
chr4 (1-55)||(25704874-25704928)
chr4 (1-55)||(44569060-44569114)
chr4 (1-53)||(21661537-21661589)
chr4 (1-53)||(21670301-21670353)
chr4 (1-55)||(22321268-22321322)
chr4 (1-55)||(40122487-40122541)
chr4 (1-54)||(21064984-21065037)
chr4 (1-55)||(20249014-20249068)
chr4 (1-45)||(50768085-50768129)
chr4 (117-240)||(4736585-4736708)
chr4 (144-217)||(14859302-14859375)
chr4 (117-240)||(5472847-5472971)
chr4 (117-228)||(14124016-14124128)
chr4 (3-55)||(19692947-19692999)
chr4 (3-55)||(19703532-19703584)
chr4 (176-240)||(53599048-53599112)
chr4 (2-56)||(50839030-50839084)
chr4 (116-240)||(29895775-29895900)
chr4 (117-240)||(20128297-20128421)
chr4 (117-240)||(38166015-38166139)
chr4 (181-244)||(14567943-14568006)
chr4 (119-237)||(21429292-21429411)
chr4 (4-55)||(32543705-32543756)
chr4 (176-215)||(35359749-35359788)
chr4 (20-55)||(39295418-39295453)
chr4 (127-244)||(8889006-8889123)
chr4 (176-245)||(24850686-24850754)
chr4 (144-245)||(43458596-43458697)
chr4 (176-240)||(1446814-1446878)
chr4 (117-240)||(2559295-2559419)
chr4 (19-55)||(34324618-34324654)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-58)||(45676-45733)
[»] chr7 (22 HSPs)
chr7 (1-55)||(27814034-27814088)
chr7 (1-55)||(25614353-25614407)
chr7 (1-55)||(36453124-36453178)
chr7 (1-55)||(10981731-10981785)
chr7 (1-55)||(40349185-40349238)
chr7 (1-55)||(47110673-47110727)
chr7 (176-244)||(23823931-23823999)
chr7 (176-238)||(29151928-29151990)
chr7 (127-240)||(4195212-4195325)
chr7 (127-240)||(17748392-17748505)
chr7 (160-240)||(1797446-1797526)
chr7 (127-240)||(42210272-42210385)
chr7 (176-236)||(365130-365190)
chr7 (117-240)||(10047875-10047999)
chr7 (180-240)||(16802109-16802169)
chr7 (117-240)||(48804669-48804793)
chr7 (176-240)||(4228813-4228874)
chr7 (138-240)||(22973953-22974055)
chr7 (176-237)||(43862031-43862092)
chr7 (176-241)||(46414660-46414725)
chr7 (138-226)||(34659226-34659314)
chr7 (117-240)||(38578866-38578990)
[»] chr6 (26 HSPs)
chr6 (1-55)||(1605801-1605855)
chr6 (1-55)||(7761523-7761577)
chr6 (1-55)||(8626705-8626759)
chr6 (1-58)||(4129649-4129706)
chr6 (4-55)||(29260418-29260469)
chr6 (1-55)||(13757430-13757484)
chr6 (4-55)||(15064695-15064746)
chr6 (6-55)||(17942671-17942720)
chr6 (1-48)||(8235848-8235895)
chr6 (1-55)||(31559738-31559792)
chr6 (117-236)||(12606421-12606541)
chr6 (117-236)||(3601075-3601195)
chr6 (117-240)||(13468920-13469044)
chr6 (117-240)||(19089485-19089609)
chr6 (176-240)||(21898635-21898699)
chr6 (1-57)||(30734481-30734537)
chr6 (127-240)||(34954629-34954742)
chr6 (117-240)||(6606096-6606220)
chr6 (176-240)||(13584509-13584573)
chr6 (4-55)||(19996322-19996373)
chr6 (17-55)||(15064933-15064971)
chr6 (146-244)||(33939994-33940092)
chr6 (144-240)||(2271330-2271424)
chr6 (117-233)||(8938705-8938822)
chr6 (176-237)||(14107417-14107478)
chr6 (117-240)||(13036003-13036127)
[»] chr3 (32 HSPs)
chr3 (1-55)||(29375355-29375409)
chr3 (1-55)||(36881503-36881557)
chr3 (1-55)||(46694110-46694164)
chr3 (4-55)||(13365069-13365120)
chr3 (4-55)||(19241668-19241719)
chr3 (1-58)||(3383299-3383356)
chr3 (4-56)||(32834988-32835040)
chr3 (169-240)||(3755553-3755624)
chr3 (1-55)||(199078-199132)
chr3 (1-55)||(23087931-23087985)
chr3 (1-55)||(48820563-48820617)
chr3 (3-55)||(18355868-18355920)
chr3 (127-240)||(29135896-29136009)
chr3 (176-237)||(51683014-51683075)
chr3 (180-244)||(41219572-41219635)
chr3 (176-226)||(928597-928647)
chr3 (127-244)||(10040536-10040652)
chr3 (3-55)||(26783694-26783746)
chr3 (4-55)||(19912164-19912215)
chr3 (138-245)||(32873571-32873677)
chr3 (4-55)||(38806331-38806382)
chr3 (4-59)||(44276771-44276826)
chr3 (3-49)||(6901786-6901831)
chr3 (1-55)||(13703435-13703489)
chr3 (17-58)||(198852-198893)
chr3 (23-60)||(37293432-37293469)
chr3 (176-240)||(6462395-6462459)
chr3 (117-240)||(25294943-25295067)
chr3 (117-240)||(47219127-47219251)
chr3 (176-244)||(49082803-49082871)
chr3 (176-240)||(52364860-52364924)
chr3 (4-44)||(54086778-54086818)
[»] chr2 (36 HSPs)
chr2 (1-55)||(22388138-22388192)
chr2 (1-55)||(23367012-23367066)
chr2 (1-58)||(12969737-12969794)
chr2 (1-55)||(1102724-1102778)
chr2 (1-55)||(1646510-1646564)
chr2 (1-55)||(3519130-3519184)
chr2 (1-55)||(39938393-39938447)
chr2 (3-55)||(40756911-40756963)
chr2 (4-57)||(37673741-37673794)
chr2 (127-245)||(11069856-11069974)
chr2 (176-240)||(16034920-16034984)
chr2 (117-240)||(18902529-18902653)
chr2 (176-240)||(37560156-37560220)
chr2 (176-240)||(38962746-38962810)
chr2 (176-240)||(41187832-41187896)
chr2 (117-240)||(41220618-41220742)
chr2 (138-245)||(6358172-6358279)
chr2 (127-240)||(331484-331597)
chr2 (117-245)||(25540403-25540532)
chr2 (3-52)||(36447483-36447532)
chr2 (176-240)||(7747257-7747321)
chr2 (117-240)||(10823043-10823167)
chr2 (117-240)||(14169608-14169732)
chr2 (180-240)||(14853430-14853490)
chr2 (176-240)||(15234120-15234184)
chr2 (176-240)||(21286427-21286491)
chr2 (3-55)||(39561895-39561947)
chr2 (176-240)||(42770710-42770774)
chr2 (170-237)||(10106574-10106641)
chr2 (169-240)||(19976859-19976930)
chr2 (116-245)||(35946717-35946846)
chr2 (127-224)||(10026626-10026723)
chr2 (127-240)||(39201518-39201631)
chr2 (117-240)||(2550851-2550975)
chr2 (117-224)||(34130301-34130408)
chr2 (176-240)||(39806944-39807008)
[»] chr1 (44 HSPs)
chr1 (1-55)||(23045279-23045333)
chr1 (1-55)||(24771906-24771960)
chr1 (1-55)||(40783657-40783711)
chr1 (4-55)||(284559-284610)
chr1 (1-56)||(321849-321904)
chr1 (1-60)||(33082967-33083026)
chr1 (1-55)||(23526462-23526516)
chr1 (1-55)||(47037852-47037906)
chr1 (3-55)||(51064754-51064806)
chr1 (169-240)||(12744576-12744647)
chr1 (169-240)||(12755566-12755637)
chr1 (117-245)||(9659179-9659307)
chr1 (1-50)||(46771861-46771910)
chr1 (1-49)||(27210961-27211009)
chr1 (169-240)||(45726486-45726557)
chr1 (17-59)||(51064995-51065037)
chr1 (176-240)||(5855506-5855570)
chr1 (117-240)||(8763975-8764099)
chr1 (176-240)||(16263529-16263593)
chr1 (117-240)||(18649352-18649476)
chr1 (144-240)||(31734273-31734368)
chr1 (117-244)||(41663856-41663984)
chr1 (176-240)||(45361942-45362006)
chr1 (117-244)||(49078094-49078222)
chr1 (176-240)||(51437453-51437517)
chr1 (4-55)||(3943753-3943804)
chr1 (3-50)||(14925687-14925734)
chr1 (4-55)||(41959799-41959850)
chr1 (2-48)||(23166858-23166904)
chr1 (17-58)||(284330-284371)
chr1 (127-240)||(2567260-2567373)
chr1 (208-245)||(13265917-13265954)
chr1 (17-58)||(23045518-23045559)
chr1 (2-55)||(27143014-27143067)
chr1 (2-55)||(31003787-31003840)
chr1 (176-245)||(34334355-34334424)
chr1 (176-240)||(16956450-16956514)
chr1 (176-240)||(17358531-17358595)
chr1 (176-240)||(18808249-18808313)
chr1 (4-48)||(25929324-25929368)
chr1 (117-240)||(26325796-26325920)
chr1 (17-57)||(41959076-41959116)
chr1 (176-236)||(44969653-44969712)
chr1 (176-240)||(50503421-50503485)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-58)||(384-441)
[»] scaffold0170 (1 HSPs)
scaffold0170 (138-240)||(9831-9933)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-35)||(287-321)
[»] scaffold0635 (1 HSPs)
scaffold0635 (170-237)||(2143-2210)
[»] scaffold0005 (1 HSPs)
scaffold0005 (181-244)||(249369-249432)
[»] scaffold0257 (1 HSPs)
scaffold0257 (4-58)||(23862-23916)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 7737042 - 7736845
Alignment:
Q  54 taatatcccacttgaaatggttagaaaaaccatacttccaatgattcaaattgnnnnnnnnncctttcgcaccg-tttccaaccaaccaacggtggacgg 152  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||           ||||||||||| ||||||| ||||||||||| |||||    
T  7737042 taatatcccacttgaaatggttagaaaacccatacttccaatgattcaatttttttattttttctttcgcaccggtttccaatcaaccaacggtcgacgg 7736943  T
Q  153 ctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaataatct 250  Q
    ||||| || || ||||||||| | ||| ||||||  ||||||||||| |||||||||||||||   | |||||||||| |||||||||||||| ||||    
T  7736942 ctaatctgacttgtaagtagagatatgtgcactgaccaaacgttgtttgtcctgagaatcgaactcgatattcctcgggtacgtccttagaatgatct 7736845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12806907 - 12806853
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12806907 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30720546 - 30720492
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720546 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36561153 - 36561099
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36561153 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40886664 - 40886610
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40886664 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25683280 - 25683229
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25683280 tgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10285112 - 10285058
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  10285112 ttgtgaaacaaaattattctttaaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23097778 - 23097724
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  23097778 ttgtgaaacaaaattattctccaaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25773872 - 25773926
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25773872 ttgtgaaacaaacttattctctaaaatggacaagtattatgaaacggagagagta 25773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 42086435 - 42086311
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||||||| ||||||||  |||| ||||||||    
T  42086435 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaa 42086336  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||||||| |||||||||    
T  42086335 cccggtattcctcgggtacgtcctt 42086311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 12081994 - 12081892
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| |||||||| |||||| |||||||  |||||  |||||||||||| ||| ||||||||  ||||||||||||| |  ||||||| ||||||||||    
T  12081994 accaaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgttgttccccctgagaatcgaacccagtattccccggatacgtc 12081895  T
Q  238 ctt 240  Q
    |||    
T  12081894 ctt 12081892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 11319781 - 11319826
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11319781 gtgaaacaaaattattctctaaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 734391 - 734339
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  734391 gtgaaacaaaattattctccaaaatggacaagtattgtgaaacggtgggagta 734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 5731919 - 5732043
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| || || |||| ||| ||||| |||||| || |||||  |||||||||||| ||| |||||||| ||||| ||||||||    
T  5731919 ctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5732018  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| ||| |||||||||    
T  5732019 cccggtattccccgggtacgtcctt 5732043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 21149782 - 21149718
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||||||||||||  ||||||||||    
T  21149782 catgcgcactggtcaaacgttgttccccctgaaaatcgaacctggtattcctcaaatacgtcctt 21149718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 24875409 - 24875322
Alignment:
Q  160 ggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaataa 247  Q
    |||||||  ||||| ||||||||||||||||||||||||||  ||| ||||||||| ||| ||||| | || ||||||||| ||||||    
T  24875409 ggctcgtgcgtagagacatgcgcactggtcaaacgttgttctccctaagaatcgaacctgatattctttgggtacgtccttggaataa 24875322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 25467458 - 25467390
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    |||||| ||||| ||| |||||||| |||||| |||||||||| |||||||| | ||||||||||||||    
T  25467458 catgcgtactggccaatcgttgttcctcctgaaaatcgaatctagtattccttgtatacgtccttagaa 25467390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 37900675 - 37900623
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||| ||||||    
T  37900675 gtgaaacaaaattattcttcaaaatagacaagtattatgaaacggaaggagta 37900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16983480 - 16983532
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 53  Q
    ||||||||||||||||||||  ||||| |||||||||||| |||| |||||||    
T  16983480 ttgtgaaacaaaattattcttcaaaatagacaagtattataaaacagagggag 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 1056676 - 1056625
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||| |||||||||||| ||||  |||||||||| ||||||||||||||||    
T  1056676 tgaaataaaattattctccaaaagtgacaagtattgtgaaacggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 14588638 - 14588740
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| |||||||| |||||  ||||| |  |||||  |||||||||||||||| |||| ||| |||||| ||||||| | | |||||| | ||||||||    
T  14588638 accaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttattcctcctgaaaatcgaacccgatattccccagatacgtc 14588737  T
Q  238 ctt 240  Q
    |||    
T  14588738 ctt 14588740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 39071107 - 39071153
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 49  Q
    ||||||||||||||||||| ||||| |||||||||| |||| |||||    
T  39071107 gtgaaacaaaattattctcaaaaatagacaagtattgtgaatcggag 39071153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 7866678 - 7866565
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    ||||| |||| ||||| ||||| || |||||  || ||||  |||||  ||||| |||||| ||| |||||||| ||||  |||||||| | ||||||||    
T  7866678 gtttctaacccaccaaaggtgggcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgttgttcctcctcggaatcgaacccggtattcc 7866579  T
Q  227 tcggatacgtcctt 240  Q
    |||| |||||||||    
T  7866578 tcgggtacgtcctt 7866565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 9805112 - 9805003
Alignment:
Q  117 ctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    |||||||||| |||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| ||| ||||||||  |||| ||||||||    
T  9805112 ctttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 9805013  T
Q  216 tctggtattc 225  Q
     | |||||||    
T  9805012 cccggtattc 9805003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 19572821 - 19572708
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||||||| ||||| |||| ||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  |||| ||||| || | ||||||||    
T  19572821 gtttccaacccaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatctaacccggtattcc 19572722  T
Q  227 tcggatacgtcctt 240  Q
     |||||||||||||    
T  19572721 ccggatacgtcctt 19572708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 30720731 - 30720772
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  30720731 ttctccaaaatggacatgtattttgaaacggagggagtaata 30720772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26168133 - 26168185
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||  |||| ||||  ||||||||| ||||||    
T  26168133 gtgaaacaaaattattctctaaaaacgacatgtatcgtgaaacggaaggagta 26168185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 37263320 - 37263221
Alignment:
Q  144 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttaga 243  Q
    |||||||| |||||  |||||||  |||||  |||||||| ||| ||| ||||||||  ||||||||||||| | | |||||| ||| ||||||||||||    
T  37263320 ggtggacgactaatccggctcgtgcgtagaggcatgcgcattggccaagcgttgttcc-cctgagaatcgaacccgatattccccgggtacgtccttaga 37263222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40918785 - 40918727
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40918785 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 40918727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7147136 - 7147190
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147136 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30999578 - 30999524
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999578 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40058357 - 40058303
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058357 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43275453 - 43275399
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275453 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 11646376 - 11646325
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11646376 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 36068306 - 36068357
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36068306 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37345794 - 37345849
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37345794 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaaggagtaa 37345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2539984 - 2539930
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  2539984 ttgtgaaacaaaattattctttaaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11174277 - 11174223
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11174277 ttgtgaaacaaaattattctttaaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 3585677 - 3585728
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  3585677 tgaaacaaaattattctctaaaatagacaagtattatgaaacggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27035218 - 27035272
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  27035218 ttgtgaaacaaaattattctccaaaatgaacaagtattatgaaacggaggcagta 27035272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 6100523 - 6100459
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||    
T  6100523 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtcctt 6100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 28568144 - 28568195
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28568144 tgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 28575737 - 28575788
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28575737 tgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 35866839 - 35866890
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  35866839 tgaaacaaaattattctccaaaatagacaagtattgtgaaacggatggagta 35866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 45400822 - 45400767
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||||||||||| ||||  |||  |||||||||||||||||||||||||    
T  45400822 gtgaaacaaaattattctccaaaaacgacttgtattatgaaacggagggagtaata 45400767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 18374061 - 18374004
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggata 233  Q
    |||||||||||||||| ||||||||  ||||||||||||| |||||||| | ||||||    
T  18374061 catgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttcccggata 18374004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 20546347 - 20546308
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattat 40  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  20546347 ttgtgaaacaaaattattcttcaaaatggacaagtattat 20546308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 45278716 - 45278758
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  45278716 ttctccaaaatggacatgtattttgaaacggagggagtaatat 45278758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 14666070 - 14666199
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||| | ||| |||||| |||| || ||||| ||||| ||  |||||  |||||||||||| |||  ||||||   |||| ||||||||    
T  14666070 ctttcgcaccggttttcgacccaccaactgtgggcgactaatctggcttgtgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaa 14666169  T
Q  216 tctggtattcctcggatacgtccttagaat 245  Q
     | |||||||| ||||||||||||| ||||    
T  14666170 cccggtattccccggatacgtccttggaat 14666199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 10535403 - 10535526
Alignment:
Q  117 ctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    |||||||||| |||||| ||  ||||| |||| ||| |||||| ||||| |  || || ||||||||||||||||| || |||||  ||||| ||| |||    
T  10535403 ctttcgcaccagtttccgacttaccaaaggtgaacgactaattcggctcatgcgtggagacatgcgcactggtcaagcggtgttcc-cctgaaaattgaa 10535501  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     |  |||||||||||||||||||||    
T  10535502 ccatgtattcctcggatacgtcctt 10535526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 10927657 - 10927593
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| ||||  |||||||| | |||||||| ||| |||||||||    
T  10927657 catgcgcactggccaagcgttgttcctcctaggaatcgaacccggtattccccgggtacgtcctt 10927593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 14846686 - 14846559
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| || || || ||| |  |||||  |||||||||||  ||| | ||||||  |||||||||||||    
T  14846686 ctttcgcaccgatttccgacccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcactgaccaatcattgttcc-cctgagaatcgaa 14846588  T
Q  216 tctggtattcctcggatacgtccttagaa 244  Q
     | |||||||| ||| |||||||||||||    
T  14846587 cccggtattccccgggtacgtccttagaa 14846559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 27035035 - 27034995
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  27035035 ttctccaaaatggacatgtattttgaaacggagggagtaat 27034995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 295534 - 295659
Alignment:
Q  119 ttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatc 217  Q
    ||||||||| |||| |||| |||||||||||||| ||||| ||| ||||  |||||  |||||||||||| |||||||||||| | ||| ||||||||||    
T  295534 ttcgcaccggtttcaaacccaccaacggtggacgactaatctggttcgtgcgtagaggcatgcgcactggccaaacgttgttcct-ctgggaatcgaatc 295632  T
Q  218 tggtattcctcggatacgtccttagaa 244  Q
    ||||||||| |||||||||||||||||    
T  295633 tggtattccccggatacgtccttagaa 295659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12071783 - 12071839
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12071783 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 12071839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14261267 - 14261321
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261267 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21310644 - 21310698
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310644 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24706301 - 24706247
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706301 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25704874 - 25704928
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704874 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44569060 - 44569114
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44569060 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21661589 - 21661537
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21661589 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21670353 - 21670301
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21670353 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22321322 - 22321268
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22321322 ttgtgaaacaaaattattctctaaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40122541 - 40122487
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40122541 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21064984 - 21065037
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagt 54  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21064984 ttgtgaaacaaaattattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20249068 - 20249014
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  20249068 ttgtgaaacaaaattattctccaaaatggacaagtattatgaaacggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50768085 - 50768129
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaac 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50768085 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 4736708 - 4736585
Alignment:
Q  117 ctttcgcaccgtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaat 216  Q
    |||||||||||||||| ||| ||||||||||| || |||||| |||| ||| |||||  ||||| || ||| |||||||||||    |||||||| |||     
T  4736708 ctttcgcaccgtttccgacccaccaacggtgggcgactaattcggcttgtacgtagaggcatgcacattggccaaacgttgtttccactgagaattgaac 4736609  T
Q  217 ctggtattcctcggatacgtcctt 240  Q
    | |||||||||||| ||| |||||    
T  4736608 ccggtattcctcgggtacatcctt 4736585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 14859375 - 14859302
Alignment:
Q  144 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatc 217  Q
    |||||| | ||||| ||||||||  ||||| ||||||||||||||||||| |||||| |||||| |||||||||    
T  14859375 ggtggatgactaatctggctcgtgcgtagagacatgcgcactggtcaaacattgttcctcctgaaaatcgaatc 14859302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 5472847 - 5472971
Alignment:
Q  117 ctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    |||||||||| |||| | ||| ||||| ||||| || |||||  |||||||  |||||  |||||||||||| ||| |||||||   |||||||||| ||    
T  5472847 ctttcgcaccagttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcaaa 5472946  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     |||||||||| |||||||||||||    
T  5472947 cctggtattccccggatacgtcctt 5472971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 14124128 - 14124016
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||||||| ||||| ||||  || |||||  |||||||  |||||  |||||||||||| |||| |||||||  |||| ||||||||    
T  14124128 ctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagaggcatgcgcactggccaaatgttgttccccctgggaatcgaa 14124029  T
Q  216 tctggtattcctc 228  Q
     ||||||||||||    
T  14124028 cctggtattcctc 14124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19692947 - 19692999
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19692947 gtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19703532 - 19703584
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19703532 gtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 53599112 - 53599048
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| |||||||||||| ||||| |||||||| | |||||||| ||| |||||||||    
T  53599112 catgcgcactggccaaacgttgttcctcctgggaatcgaacccggtattccccgggtacgtcctt 53599048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 50839084 - 50839030
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    |||||||||||||||||||| ||||  |||||||||| ||||| |||||||||||    
T  50839084 tgtgaaacaaaattattctccaaaagcgacaagtattgtgaaatggagggagtaa 50839030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 29895900 - 29895775
Alignment:
Q  116 cctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcga 214  Q
    |||||||||||| ||||| | | ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  |||| |||||||    
T  29895900 cctttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcga 29895801  T
Q  215 atctggtattcctcggatacgtcctt 240  Q
    | | |||||||| |||||||||||||    
T  29895800 acccggtattccccggatacgtcctt 29895775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 20128421 - 20128297
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||  ||| ||||| |||||||| ||||| | ||||||  ||| |  |||||||||||| ||| | ||||||  |||||||||||||    
T  20128421 ctttcgcaccggtttctgacccaccaatggtggacgactaatctagctcgtgcgtaaaggcatgcgcactggccaagcattgttccccctgagaatcgaa 20128322  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     |  ||||||| |||||||||||||    
T  20128321 cccagtattccccggatacgtcctt 20128297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 38166139 - 38166015
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| ||||| || |||||  |||||||  |||||  |||||||||||| ||| ||||||||  |||| ||||| ||    
T  38166139 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatccaa 38166040  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     |  ||||||| |||||||||||||    
T  38166039 cccagtattccccggatacgtcctt 38166015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 14568006 - 14567943
Alignment:
Q  181 gcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    ||||||||||| |||| |||  ||||||||||||| |||||||||| |  ||||||||||||||    
T  14568006 gcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaa 14567943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 21429411 - 21429292
Alignment:
Q  119 ttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatc 217  Q
    ||||||||| ||||| ||| ||||| |||||||| ||| | || |||||  |||||  ||||||||||||  |||||||||||  ||| | ||||||| |    
T  21429411 ttcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaacc 21429312  T
Q  218 tggtattcctcggatacgtc 237  Q
     | |||||||||||||||||    
T  21429311 cgatattcctcggatacgtc 21429292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 32543705 - 32543756
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||  |||||||||| |||||| || ||||||    
T  32543705 tgaaacaaaattattctctaaaagcgacaagtattgtgaaacagaaggagta 32543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 35359788 - 35359749
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  35359788 catgcgcactggtcaaacgttgttccccctgagaatcgaa 35359749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 39295418 - 39295453
Alignment:
Q  20 tctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39295418 tctaaaatggacaagtattatgaaacggaaggagta 39295453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 8889123 - 8889006
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||  |||  |||||||  |||  |||||||| | ||||||||    
T  8889123 gtttccgacccaccaaaggtggacgactaatccggctcatgcgtagagccatgcgcactgcccaagtgttgttccccctaggaatcgaacccggtattcc 8889024  T
Q  227 tcggatacgtccttagaa 244  Q
     |||||||||||||||||    
T  8889023 ccggatacgtccttagaa 8889006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 24850686 - 24850754
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaat 245  Q
    ||||||||||||||||  |||||||  ||||| ||| |||||||||||| | ||||||||||||| ||||    
T  24850686 catgcgcactggtcaagtgttgttcc-cctgataattgaatctggtatttcccggatacgtccttggaat 24850754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 43458697 - 43458596
Alignment:
Q  144 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttaga 243  Q
    |||||||| |||||  |||||||  |||||  |||||||||||| ||| |||| ||| ||||| ||||||||||  ||||||| |  |||||||||| ||    
T  43458697 ggtggacgactaatccggctcgtccgtagaggcatgcgcactggccaagcgttcttcctcctgggaatcgaatccagtattccccaaatacgtccttgga 43458598  T
Q  244 at 245  Q
    ||    
T  43458597 at 43458596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 1446878 - 1446814
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| |||  |||||||  |||| |||||||| | |||||||| |||||||||||||    
T  1446878 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtcctt 1446814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 2559419 - 2559295
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| ||||||||  ||||  |||| ||  |||||  |||||||||||| ||| |||||||| ||||   |||||||    
T  2559419 ctttcgcaccggtttccgacccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgttgttcctcctagaaatcgaa 2559320  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
    || |||||||| | | |||||||||    
T  2559319 tccggtattccccaggtacgtcctt 2559295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34324654 - 34324618
Alignment:
Q  19 ctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34324654 ctctaaaatggacaagtattatgaaacagatggagta 34324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45676 - 45733
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 45733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27814034 - 27814088
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27814034 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25614407 - 25614353
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25614407 ttgtgaaacaaaattattctctaaaatggacaattattatgaaacggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36453178 - 36453124
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36453178 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagagagta 36453124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10981731 - 10981785
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  10981731 ttgtgaaacaaaattattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40349185 - 40349238
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40349185 ttgtgaaacaaa-ttattctctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 47110673 - 47110727
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  47110673 ttgtgaaacaaaattattctctaaaatgaataagtattatgaaacggagggagta 47110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 23823999 - 23823931
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    |||||||||||| |||||||||||   | |||||||| |||||| ||||||||||||||||||||||||    
T  23823999 catgcgcactggccaaacgttgtttcccttgagaatcaaatctgatattcctcggatacgtccttagaa 23823931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 29151990 - 29151928
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcc 238  Q
    ||||||||||||||||||||||||| ||||| |||||||| | |||||||||| | |||||||    
T  29151990 catgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtattcctcaggtacgtcc 29151928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 4195212 - 4195325
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||||||| ||||| ||||||||||||||  ||||| |  |||||  |||||||||| | |||| ||||||| |||||  |||||||   ||||||||    
T  4195212 gtttccaacccaccaatggtggacggctaatccggctcatgcgtagaggcatgcgcactagccaaatgttgttcctcctggaaatcgaactcggtattcc 4195311  T
Q  227 tcggatacgtcctt 240  Q
     |||||||||||||    
T  4195312 ccggatacgtcctt 4195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 17748392 - 17748505
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| | ||| |||||||| |||||  |||||||| |||||  |||||||||||| ||| ||||||||  |||| |||||||| | ||||||||    
T  17748392 gtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattcc 17748491  T
Q  227 tcggatacgtcctt 240  Q
     || ||||||||||    
T  17748492 ccgaatacgtcctt 17748505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 1797526 - 1797446
Alignment:
Q  160 ggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||  ||||| ||||||||||||| ||| |||||||   |||| |||||||| | ||||||||||||||||||||||    
T  1797526 ggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcgaacccggtattcctcggatacgtcctt 1797446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 42210272 - 42210385
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| |||||||||||  |  ||||  |||||||  |||||  |||||||||||| |||||||||||    ||| |||||||| | ||||||||    
T  42210272 gtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttttcactgggaatcgaagccggtattcc 42210371  T
Q  227 tcggatacgtcctt 240  Q
    ||||||||||||||    
T  42210372 tcggatacgtcctt 42210385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 365190 - 365130
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 236  Q
    ||||||||||| | || |||||||| ||||| |||||||| | ||||||||||||||||||    
T  365190 catgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcggatacgt 365130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 10047875 - 10047999
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| ||||||  |||| |  |||||  | |||||||||| |||  |||||||  |||| ||||||||    
T  10047875 ctttcgcaccggtttccgacccaccaatggtggacgactaattctgctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcgaa 10047974  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| |||||||||||||    
T  10047975 cccggtattccccggatacgtcctt 10047999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 16802169 - 16802109
Alignment:
Q  180 cgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||| ||| |||||||| |||| ||||||||||| |||||||| ||| |||||||||    
T  16802169 cgcactggccaatcgttgttcctcctaagaatcgaatccggtattccccgggtacgtcctt 16802109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 48804793 - 48804669
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  | || ||||||||    
T  48804793 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaa 48804694  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| |||||||||||||    
T  48804693 cccggtattccccggatacgtcctt 48804669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 4228813 - 4228874
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||| ||||||| ||||||||||||   |||  ||||||| ||||||||||||||||||||||||    
T  4228813 catgtgcactggccaaacgttgttc---ctggaaatcgaacctggtattcctcggatacgtcctt 4228874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 22974055 - 22973953
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| |||||||| ||||| |||||| |  |||||  ||||| |||||| ||| ||||||||  ||||||||||||| | |||||||| ||  ||||||    
T  22974055 accaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacccggtattccccgagtacgtc 22973956  T
Q  238 ctt 240  Q
    |||    
T  22973955 ctt 22973953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 43862031 - 43862092
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    |||||||||||| ||||||||||||  |||| |||||||| | |||||||| | ||||||||    
T  43862031 catgcgcactggccaaacgttgttccccctgggaatcgaacccggtattccccagatacgtc 43862092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 46414725 - 46414660
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctta 241  Q
    |||||||| ||| ||| |||| ||| ||||||||||||||  ||||||||| ||| ||||||||||    
T  46414725 catgcgcattggccaagcgttattcatcctgagaatcgaacttggtattccacgggtacgtcctta 46414660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 34659314 - 34659226
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    ||||| ||||| || |||||  |||||||  |||||  |||||||||||||||| ||||||||  | ||||||||||| | ||||||||    
T  34659314 accaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatcgaacccggtattcc 34659226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 38578866 - 38578990
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| ||||| || |||||  ||||| |  |||||  |||||||||||| ||| ||||||||  |||| ||||||||    
T  38578866 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 38578965  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | |||||| ||| |||||||||    
T  38578966 cccgatattccccgggtacgtcctt 38578990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1605801 - 1605855
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605801 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7761523 - 7761577
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7761523 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8626705 - 8626759
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626705 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4129649 - 4129706
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4129649 ttgtgaaacaaaattattttctaaaatggacaagtattatgaaacggagggagtaata 4129706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 29260418 - 29260469
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260418 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13757430 - 13757484
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13757430 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 15064746 - 15064695
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15064746 tgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 17942671 - 17942720
Alignment:
Q  6 aaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17942671 aaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8235848 - 8235895
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8235848 ttgtgaaacaaaattattctctaaaatagacaagtattatgaaacgga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31559792 - 31559738
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  31559792 ttgtaaaataaaattattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 12606541 - 12606421
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| |||||| |  ||||| ||||| || |||||  |||||||  |||||  |||||||||||| ||||||||||||  ||||  |||||||    
T  12606541 ctttcgcaccggtttccagctcaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttccccctggaaatcgaa 12606442  T
Q  216 tctggtattcctcggatacgt 236  Q
    ||||||||||| |||||||||    
T  12606441 tctggtattccccggatacgt 12606421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 3601195 - 3601075
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  |||||||  ||| |  |||||||||||| ||| ||||||||  |||||||||||||    
T  3601195 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcgaa 3601096  T
Q  216 tctggtattcctcggatacgt 236  Q
     | |||||||| || ||||||    
T  3601095 accggtattccccgaatacgt 3601075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 13469044 - 13468920
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||||||| ||||| ||||| || ||||| ||||||||  |||||  |||| ||||||  ||| ||||||||  |||  |||| |||    
T  13469044 ctttcgcaccggtttccaacccaccaatggtgggcgactaatctggctcgtgcgtagaggcatgtgcactgaccaatcgttgttccccctaggaattgaa 13468945  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     |||||||||| |||||||||||||    
T  13468944 cctggtattccccggatacgtcctt 13468920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 19089609 - 19089485
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| ||| |||| |||||  |||||||  |||||  ||||| |||||| |||  |||||||  |||| ||||| ||    
T  19089609 ctttcgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaagtgttgttccccctgggaatcaaa 19089510  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     ||||||||||||||||||||||||    
T  19089509 cctggtattcctcggatacgtcctt 19089485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 21898699 - 21898635
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||    
T  21898699 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtcctt 21898635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30734537 - 30734481
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    |||| ||||||||||||| || |||||||||||||||||||||| ||||| ||||||    
T  30734537 ttgtaaaacaaaattattttccaaaatggacaagtattatgaaaaggaggaagtaat 30734481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 34954629 - 34954742
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| | ||| |||||||| ||||| |||||| |  |||||   ||| ||||||| ||||||||||||  ||||||||||||| ||||||||||    
T  34954629 gtttccgacccatcaaaggtggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgttccccctgagaatcgaacctggtattcc 34954728  T
Q  227 tcggatacgtcctt 240  Q
     | | |||||||||    
T  34954729 ccaggtacgtcctt 34954742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 6606096 - 6606220
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  ||||  |||||| |||  |||||||  |||||||||||||    
T  6606096 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaagtgttgttccccctgagaatcgaa 6606195  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| |||||||||||||    
T  6606196 cccggtattccccggatacgtcctt 6606220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 13584509 - 13584573
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| |||||||||||| || |  |||||||| |||||||||||||  |||||||||    
T  13584509 catgcgcactggccaaacgttgttcatcttaggaatcgaacctggtattcctcgagtacgtcctt 13584573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 19996373 - 19996322
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19996373 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 15064933 - 15064971
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 33940092 - 33939994
Alignment:
Q  146 tggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    |||||| |||||  |||||||  |||||  |||||||| |||| ||   |||||| ||||||||||| || |  |||||||||||||||||||||||||    
T  33940092 tggacgactaatccggctcgtgtgtagaggcatgcgcaatggttaagtattgttcctcctgagaatcaaacccagtattcctcggatacgtccttagaa 33939994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 2271330 - 2271424
Alignment:
Q  144 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||| |||||  |||||||  ||||| |||||||||||||  || ||||||||   |||||||||||| | |||||||| || ||||||||||    
T  2271330 ggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgttc--tctgagaatcgaacccggtattccccgaatacgtcctt 2271424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 8938822 - 8938705
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| | ||| |||||||| |||||| ||||| |  |||||  | ||||||||||||||  ||||||| ||||| ||||||||    
T  8938822 ctttcgcaccggtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgttcctcctgggaatcgaa 8938723  T
Q  216 tctggtattcctcggata 233  Q
     |  ||||||| ||||||    
T  8938722 ccaagtattccccggata 8938705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 14107417 - 14107478
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    |||| ||||||||||| |||||||| ||||| |||||||| | |||||||| || |||||||    
T  14107417 catgtgcactggtcaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtc 14107478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 13036003 - 13036127
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| |||||  ||||||| ||||| |||||| |  |||||  |||||||||||| |||  |||||||  ||||| |||||||    
T  13036003 ctttcgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcgaa 13036102  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | |||||| || ||||||||||    
T  13036103 cccgatattccccgaatacgtcctt 13036127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29375355 - 29375409
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29375355 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36881503 - 36881557
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881503 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46694164 - 46694110
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46694164 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 13365069 - 13365120
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13365069 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 19241719 - 19241668
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19241719 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3383299 - 3383356
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  3383299 ttgtgaaacaaaattattctctaaaatggacaagtattataaaacgaaaggagtaata 3383356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 32835040 - 32834988
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32835040 tgaaacgaaattattctctacaatggacaagtattatgaaacggagggagtaa 32834988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 3755624 - 3755553
Alignment:
Q  169 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||   |||||||| |||||||||||||    
T  3755624 gtagagacatgcgcactggtcaaacgttgttcctcctgggaatcgaagtcggtattccccggatacgtcctt 3755553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 199078 - 199132
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  199078 ttgtgaaacaaaattattttctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23087985 - 23087931
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  23087985 ttgtgaaacaaaattattctttaaaatcgacaagtattatgaaacggaggaagta 23087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48820563 - 48820617
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  48820563 ttgtgaaacaaaattattttttaaaatggacaagtattatgaaacggaggaagta 48820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18355920 - 18355868
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  18355920 gtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 29136009 - 29135896
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||||||| ||||| |||||| | |||||  ||||| |  |||||  |||||||||||| |||  |||||||  |||| |||||||||| ||||||||    
T  29136009 gtttccaacccaccaatggtggaagactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaatccggtattcc 29135910  T
Q  227 tcggatacgtcctt 240  Q
     |||||||||||||    
T  29135909 ccggatacgtcctt 29135896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 51683014 - 51683075
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    |||||||||||||||| ||||||||  |||| |||||||| |||||||||| ||||||||||    
T  51683014 catgcgcactggtcaagcgttgttccccctgggaatcgaacctggtattccccggatacgtc 51683075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 41219635 - 41219572
Alignment:
Q  180 cgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    |||||||| |||||||||||| ||||||||||||||  ||||||||| || ||||||||||||||    
T  41219635 cgcactggccaaacgttgttcctcctgagaatcgaacttggtattcc-cgtatacgtccttagaa 41219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 928647 - 928597
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    ||||||||||||||||  |||||||  ||||||||||||||||||||||||    
T  928647 catgcgcactggtcaagtgttgttccccctgagaatcgaatctggtattcc 928597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 10040652 - 10040536
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||||||| ||||| |||||||| | | |  |||||||  |||||  |||||||||||| ||| ||||||||  ||||||||||||| | | ||||||    
T  10040652 gtttccaacccaccaaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcc-cctgagaatcgaacccgatattcc 10040554  T
Q  227 tcggatacgtccttagaa 244  Q
     ||| |||||||||||||    
T  10040553 ccgggtacgtccttagaa 10040536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26783694 - 26783746
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||| |||||||||| | ||||||||| ||||    
T  26783694 gtgaaacaaaattattctttaaaatagacaagtattgtaaaacggaggaagta 26783746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 19912164 - 19912215
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19912164 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 32873571 - 32873677
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| ||||| || ||||| |||||| || |||||  |||| ||||||||||| ||||||||  |||  |||||||| |||||||||| ||| ||||||    
T  32873571 accaaaggtgggcgactaatctggctcatacgtagaggcatgtgcactggtcaagcgttgttctccctaggaatcgaacctggtattcc-cgggtacgtc 32873669  T
Q  238 cttagaat 245  Q
    ||| ||||    
T  32873670 cttggaat 32873677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 38806331 - 38806382
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  38806331 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 44276826 - 44276771
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    ||||||||||   |||||||||||||||| ||||| |||||||||| |||||||||    
T  44276826 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagtaatat 44276771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6901786 - 6901831
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 49  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  6901786 gtgaaacaaaattattctccaaaatggacaa-tattgtgaaacggag 6901831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13703435 - 13703489
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||| ||||||| |||||||  | |||||||||||||||||||||||| ||||||    
T  13703435 ttgtaaaacaaatttattcttcagaatggacaagtattatgaaacggatggagta 13703489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 198893 - 198852
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  198893 ttctccaaaatggacatgtattttgaaacggagggagtaata 198852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 37293469 - 37293432
Alignment:
Q  23 aaaatggacaagtattatgaaacggagggagtaatatc 60  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagtattatc 37293432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 6462459 - 6462395
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| ||||||||  |||| |||||||| | |||||||| | |||||||||||    
T  6462459 catgcgcactggccaagcgttgttctccctgtgaatcgaacccggtattccccagatacgtcctt 6462395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 25295067 - 25294943
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||  ||||| |   ||||  |||||||||||| |||  ||||||   || ||||||| ||    
T  25295067 ctttcgcaccggtttccaacccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttccccagagaatcaaa 25294968  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| |||||||||||||    
T  25294967 cccggtattccccggatacgtcctt 25294943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 47219251 - 47219127
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| | ||| |||||||| |||||  ||||| |  |||||  |||||||||| | ||| |||||||   | || ||||||||    
T  47219251 ctttcgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcccttgggaatcgaa 47219152  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     |||||||||| |||||||||||||    
T  47219151 cctggtattccccggatacgtcctt 47219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 49082871 - 49082803
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    ||||||||||||  || ||||||||  |||| ||||||||   |||||||| |||||||||||||||||    
T  49082871 catgcgcactggctaagcgttgttctccctgggaatcgaactcggtattccccggatacgtccttagaa 49082803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 52364860 - 52364924
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||||||| |||||||| | ||| ||||||||   |||||||| ||| |||||||||    
T  52364860 catgcgcactggtcaagcgttgttccttctgggaatcgaactcggtattccccgggtacgtcctt 52364924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 54086778 - 54086818
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaa 44  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  54086778 tgaaacaaaagtattctccaaaatggacaagtattgtgaaa 54086818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22388192 - 22388138
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22388192 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23367012 - 23367066
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23367012 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12969794 - 12969737
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12969794 ttgtgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagtaata 12969737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1102724 - 1102778
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1102724 ttgtgaaacaaaattattctctcaaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1646510 - 1646564
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1646510 ttgtgaaacaaaattattctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3519130 - 3519184
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3519130 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39938393 - 39938447
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39938393 ttgtgaaacaaaattattctctaaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40756963 - 40756911
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40756963 gtgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 37673794 - 37673741
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  37673794 tgaaacaaagttattctctaaaatggacaagtattatgaaacggaaggagtaat 37673741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 11069974 - 11069856
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| |||||||||||||| ||||||  ||||||  |||||   ||||||||||| ||||||||||||  |||  |||||||| ||||||||||    
T  11069974 gtttccgacccaccaacggtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgttccccctcggaatcgaacctggtattcc 11069875  T
Q  227 tcggatacgtccttagaat 245  Q
     ||| ||||||||| ||||    
T  11069874 ccgggtacgtccttggaat 11069856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 16034984 - 16034920
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| |||||||||| ||||||||  ||||| ||||||| | ||||||||||||||||||||||    
T  16034984 catgcacactggtcaagcgttgttccgcctgaaaatcgaacccggtattcctcggatacgtcctt 16034920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 18902529 - 18902653
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| ||||| || ||||| ||||||||  ||||| ||| ||||||||||||| ||||||||  | || ||||||||    
T  18902529 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgttccccgtgggaatcgaa 18902628  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| ||  |||||||||    
T  18902629 cccggtattccccgagtacgtcctt 18902653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 37560220 - 37560156
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||  ||||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  37560220 catgcgcactgaccaaacgttgttccccttgagaatcgaacctggtattcctcgggtacgtcctt 37560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 38962810 - 38962746
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| |||||| ||||||| | |||||||| |||||||||||||    
T  38962810 catgcgcactggccaagcgttgttcctcctgaaaatcgaacccggtattccccggatacgtcctt 38962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 41187896 - 41187832
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||||||| |||||||  |||| ||||| ||||  ||||||||||||||||||||||    
T  41187896 catgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgtcctt 41187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 41220742 - 41220618
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| || || |||| ||| |||||| ||||| |  |||||  |||||||||||| ||| |||||||| ||||| ||||||||    
T  41220742 ctttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 41220643  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| ||| |||||||||    
T  41220642 cccggtattccccgggtacgtcctt 41220618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 6358172 - 6358279
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| |||||||| |||||  ||||| |  |||||  |||||||||||| |||  |||||||  ||||  |||||||||||||||||| ||||||||||    
T  6358172 accaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaatctggtattccccggatacgtc 6358271  T
Q  238 cttagaat 245  Q
    ||| ||||    
T  6358272 ctttgaat 6358279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 331597 - 331484
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||||||| ||||| ||||| || |||||  ||||| |  |||||| |||||||||||| |||  |||||||  |||| |||||||| | ||||||||    
T  331597 gtttccaacccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattcc 331498  T
Q  227 tcggatacgtcctt 240  Q
     ||| |||||||||    
T  331497 ccgggtacgtcctt 331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 25540403 - 25540532
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  |||||||  |||||  |||||||||||| ||| ||||||||  |||  ||||||||    
T  25540403 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaa 25540502  T
Q  216 tctggtattcctcggatacgtccttagaat 245  Q
     |  ||||||| | ||||||||||| ||||    
T  25540503 cccagtattccccagatacgtccttggaat 25540532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 36447483 - 36447532
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggga 52  Q
    ||||||||||||||||||||||||  |||| ||||| |||||||||||||    
T  36447483 gtgaaacaaaattattctctaaaagcgacatgtattgtgaaacggaggga 36447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 7747321 - 7747257
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| |||||| |||||||||||| ||||  |||||||| | |||||||| |||||||||||||    
T  7747321 catgcacactggccaaacgttgttcctcctaggaatcgaacccggtattccccggatacgtcctt 7747257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 10823167 - 10823043
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| || || ||||| || |||||  |||||||  |||||  |||||||||||| ||| |||||||| ||||| ||||| ||    
T  10823167 ctttcgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcaaa 10823068  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | |||||||| ||| |||||||||    
T  10823067 cccggtattccccgggtacgtcctt 10823043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 14169608 - 14169732
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| ||| |||| |||||  ||||| |  ||||| |||||||||||||||||  |||||||  || ||||||||||    
T  14169608 ctttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaa 14169707  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | |||||| || ||||||||||    
T  14169708 cccgatattccccgaatacgtcctt 14169732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 14853430 - 14853490
Alignment:
Q  180 cgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||| |||| |||||||  ||||| |||||||||||||||||| ||||||| |||||    
T  14853430 cgcactggccaaaagttgttccccctgaaaatcgaatctggtattccccggatacatcctt 14853490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 15234120 - 15234184
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||||||||||||||  |||||||  ||||||||||||| || ||||||| ||| |||||||||    
T  15234120 catgcgcactggtcaagtgttgttccccctgagaatcgaacctagtattccccgggtacgtcctt 15234184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 21286491 - 21286427
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||||||| |||||||   |||| |||||||| | |||||||| |||||||||||||    
T  21286491 catgcgcactggtcaagcgttgtttcgcctgggaatcgaacccggtattccccggatacgtcctt 21286427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39561947 - 39561895
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||| ||||  |||| ||||| ||||||||||||||||    
T  39561947 gtgaaacaaaattattctccaaaaacgacatgtattgtgaaacggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 42770710 - 42770774
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| ||||||||  ||||||||| ||| | |||||| |||||||||||||||    
T  42770710 catgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgtcctt 42770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 10106641 - 10106574
Alignment:
Q  170 tagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| ||||||| ||  |||| |||||||| | |||||||||||||| |||||| ||||||||||||    
T  10106641 tagaagcatgcgcgctaatcaagcgttgttccttctgagaatcgaatccggtatttctcggatacgtc 10106574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 19976859 - 19976930
Alignment:
Q  169 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| ||||||||||||  |||||||| |||  ||||| ||||||| | |||||||| |||||||||||||    
T  19976859 gtagagacatgcgcactgaccaaacgttattccccctgaaaatcgaacccggtattccccggatacgtcctt 19976930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 35946846 - 35946717
Alignment:
Q  116 cctttcgcacc-gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcga 214  Q
    ||||||||||| |||||| ||| ||||| |||||||| |||||  |||||||  |||||  ||||| || ||| ||| ||||||||  |||  |||||||    
T  35946846 cctttcgcaccagtttccgacccaccaatggtggacgactaatccggctcgtgcgtagaggcatgcacaatggccaagcgttgttcc-cctaggaatcga 35946748  T
Q  215 atctggtattcctcggatacgtccttagaat 245  Q
    |   |||||||| ||||||||||||||||||    
T  35946747 actcggtattccccggatacgtccttagaat 35946717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 10026626 - 10026723
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtatt 224  Q
    |||||| ||| ||||| ||||| || |||||  ||||| |  |||||  |||||||||||| ||||||||||||  ||||||||||||| | ||||||    
T  10026626 gtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgagaatcgaacccggtatt 10026723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 39201518 - 39201631
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| ||||| |||| ||| |||||  ||||| |  |||||  ||||| |||||| ||||| ||||||  ||||||||||||||  ||||||||    
T  39201518 gtttccgacccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacattgttccccctgagaatcgaattcggtattcc 39201617  T
Q  227 tcggatacgtcctt 240  Q
    |||  |||||||||    
T  39201618 tcgagtacgtcctt 39201631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 2550975 - 2550851
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||| ||||| |||||  |||| || |||||  ||||| |  ||||| |||||||||||||  ||  ||||||| ||||| ||||||||    
T  2550975 ctttcgcaccggttttcaacccaccaaaagtgggcgactaatccggctcatgcgtagagacatgcgcactggctaagtgttgttcctcctgggaatcgaa 2550876  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | |||||| |||||||||||||    
T  2550875 cccgatattccccggatacgtcctt 2550851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 34130301 - 34130408
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| | | ||||| ||| |||| ||||| |||||| |  ||||| ||||| ||| |||||||||||||||| |||||| |||||||    
T  34130301 ctttcgcaccgatttccgatctaccaatggtagacgactaatctggctcatgcgtagagacatgtgcaatggtcaaacgttgttc-tcctgaaaatcgaa 34130399  T
Q  216 tctggtatt 224  Q
     ||| ||||    
T  34130400 cctgatatt 34130408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 39806944 - 39807008
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| |||||||||||  || || |||||||| | |||||||| ||| |||||||||    
T  39806944 catgcgcactggccaaacgttgtttctcttgggaatcgaacccggtattccccgggtacgtcctt 39807008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23045333 - 23045279
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045333 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24771960 - 24771906
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24771960 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40783711 - 40783657
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40783711 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 284559 - 284610
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  284559 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 321849 - 321904
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  321849 ttgtgaaacaaaaatattctctaaaatggacaagtattatgaaacggagggagtaa 321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33082967 - 33083026
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatatc 60  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  33082967 ttgtgaaacaaaattattctttaaaatggacaagtattatgaaacggagggagtattatc 33083026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23526462 - 23526516
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  23526462 ttgtgaaacaaaattattcttcaaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47037906 - 47037852
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  47037906 ttgtaaaacaaaattattctttaaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 51064806 - 51064754
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  51064806 gtgaaacaaaattattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 12744576 - 12744647
Alignment:
Q  169 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| ||||||||||| ||||| ||||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  12744576 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtcctt 12744647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 12755566 - 12755637
Alignment:
Q  169 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| ||||||||||| ||||| ||||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  12755566 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtcctt 12755637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 9659179 - 9659307
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||  ||||| |  ||| |  |||||||||| ||||||||||||||  |||| ||||||||    
T  9659179 ctttcgcaccggtttccaacccaccaaaggtggacgactaatccggctcatgcgtaaaggcatgcgcactagtcaaacgttgttc-ccctgggaatcgaa 9659277  T
Q  216 tctggtattcctcggatacgtccttagaat 245  Q
     | |||||||| ||  ||||||||||||||    
T  9659278 cccggtattccccgagtacgtccttagaat 9659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46771861 - 46771910
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagg 50  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  46771861 ttgtgaaacaaaattattcttcaaaatgaacaagtattatgaaacggagg 46771910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27211009 - 27210961
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 49  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  27211009 ttgtgaaacaaaattattcttaaaaatggacaaatattatgaaacggag 27210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 45726486 - 45726557
Alignment:
Q  169 gtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||| |||| |||||||| |||| ||| ||| |||||||||||||| | |||||||||||| |||||||||    
T  45726486 gtagagacatacgcactggccaaatgttattcctcctgagaatcgaaccaggtattcctcgggtacgtcctt 45726557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 51064995 - 51065037
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagtaatat 51065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 5855570 - 5855506
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| ||||| |||||||| | |||||||| || ||||||||||    
T  5855570 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtcctt 5855506  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 8764099 - 8763975
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| |||||||||||||| |||||  |||||||  |||||  |||||||||||| |||  |||||||  |||| ||| ||||    
T  8764099 ctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaaacgaa 8764000  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | |||||| ||| |||||||||    
T  8763999 cccgatattccccgggtacgtcctt 8763975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 16263593 - 16263529
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| |||||  ||||||| |||||||||| | |||||||||||    
T  16263593 catgcgcactggccaagcgttgttcctcctggaaatcgaacctggtattccccagatacgtcctt 16263529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 18649352 - 18649476
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||||| | || || ||||| ||  |||| ||||||||| |||||  |||||||||||||||| ||||||||  ||||| |||||||    
T  18649352 ctttcgcaccggtttccaatccactaaaggtgggcgattaatctggctcgtacgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaa 18649451  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | |||||  | |||||||||||    
T  18649452 cccgatattctccagatacgtcctt 18649476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 31734368 - 31734273
Alignment:
Q  144 ggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||||||  |||||||||||||| |||||  |||||||||||| ||| |||||||   ||| |||||||||||  ||||||||||| ||| |||||    
T  31734368 ggtggacgattaatttggctcgtacgtagaggcatgcgcactggccaatcgttgtttcccct-agaatcgaatccagtattcctcgggtacatcctt 31734273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 41663856 - 41663984
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||   |||| |  |||||  |||||||||||  |||  |||||||  |||| ||||||||    
T  41663856 ctttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaa 41663955  T
Q  216 tctggtattcctcggatacgtccttagaa 244  Q
     | |||||||| |||||||||||||||||    
T  41663956 cccggtattccccggatacgtccttagaa 41663984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 45361942 - 45362006
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||| ||| |||||||| |||||||||||||| | ||||||||  || |||||||||    
T  45361942 catgcgcactggccaagcgttgttcctcctgagaatcgaacccggtattcccagggtacgtcctt 45362006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 49078222 - 49078094
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||| ||| |||||  ||||| |  |||||  |||||||||||| |||  ||||||   |||| ||||||||    
T  49078222 ctttcgcaccggtttccgacctaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaa 49078123  T
Q  216 tctggtattcctcggatacgtccttagaa 244  Q
     | |||||||| |||||||||||||||||    
T  49078122 cccggtattccccggatacgtccttagaa 49078094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 51437517 - 51437453
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||||||| ||||||||  | || |||||||| | | ||||||||||||||||||||    
T  51437517 catgcgcactggtcaagcgttgttccccatgggaatcgaacccgatattcctcggatacgtcctt 51437453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 3943753 - 3943804
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  3943753 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 14925687 - 14925734
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagg 50  Q
    ||||||||||||||| ||||||||  |||||||||| |||||||||||    
T  14925687 gtgaaacaaaattatgctctaaaaacgacaagtattgtgaaacggagg 14925734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 41959799 - 41959850
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  41959799 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 23166904 - 23166858
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    |||||||||||||||||||||||||  ||| |||||| |||||||||    
T  23166904 tgtgaaacaaaattattctctaaaagcgacgagtattgtgaaacgga 23166858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 284371 - 284330
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  284371 ttctccaaaatggacatgtattttgaaacggagggagtaata 284330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 2567373 - 2567260
Alignment:
Q  127 gtttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcc 226  Q
    |||||| ||| ||||| | |||||||||||| || ||||| ||||||  |||||||||||| ||| |||||||   || || ||||||| | |||||||     
T  2567373 gtttccgacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgttttccccgaaaatcgaacccggtattct 2567274  T
Q  227 tcggatacgtcctt 240  Q
     || ||||||||||    
T  2567273 ccgaatacgtcctt 2567260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 13265954 - 13265917
Alignment:
Q  208 gaatcgaatctggtattcctcggatacgtccttagaat 245  Q
    |||||||| | |||||||||||||||||||||||||||    
T  13265954 gaatcgaaccaggtattcctcggatacgtccttagaat 13265917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 23045518 - 23045559
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  23045518 ttctccaaaatggacatgtattttgaaacggagggagtaata 23045559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 27143067 - 27143014
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||  ||||| ||||||||| |||| ||||||    
T  27143067 tgtgaaacaaaattattctccaaaagcgacaattattatgaagcggatggagta 27143014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 31003840 - 31003787
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||  || ||||||| |||||| |||||||||    
T  31003840 tgtgaaacaaaattattctccaaaagcgataagtattgtgaaacagagggagta 31003787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 34334355 - 34334424
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaat 245  Q
    |||||||||||| |||  |||||||  |||| |||||||| | |||||||| ||||||||||||| ||||    
T  34334355 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaat 34334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 16956514 - 16956450
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||||||||||||||||||||||   |||||||| ||||   |||||||| ||| |||||||||    
T  16956514 catgcgcactggtcaaacgttgttacccctgagaaccgaacacggtattccccgggtacgtcctt 16956450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 17358531 - 17358595
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||| ||||||| ||||||||  ||||||||||||| | |||||||| |  ||||||||||    
T  17358531 catgcgcattggtcaagcgttgttctccctgagaatcgaacccggtattccccaaatacgtcctt 17358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 18808313 - 18808249
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    |||||||||||||||| ||||||||   |||||||| ||| ||| |||||||  |||||||||||    
T  18808313 catgcgcactggtcaagcgttgttccctctgagaattgaacctgttattccttagatacgtcctt 18808249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 25929324 - 25929368
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    ||||||||||||||||| |||||  |||||||||| |||||||||    
T  25929324 tgaaacaaaattattctttaaaagcgacaagtattgtgaaacgga 25929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 26325920 - 26325796
Alignment:
Q  117 ctttcgcaccg-tttccaaccaaccaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaa 215  Q
    ||||||||||| ||||| ||| ||||| |||||||| |||||  ||||| |  |||||  |||||||||||  |||  |||||||   ||| ||||||||    
T  26325920 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttcccgctgggaatcgaa 26325821  T
Q  216 tctggtattcctcggatacgtcctt 240  Q
     | | ||||||||||||||||||||    
T  26325820 cccgatattcctcggatacgtcctt 26325796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 41959116 - 41959076
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  41959116 ttctccaaaatggacatgtattttgaaacggagggagtaat 41959076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 44969712 - 44969653
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 236  Q
    ||||| |||||| ||| |||||||| |||||||||||||| |||||||| ||||| |||||    
T  44969712 catgcacactggccaagcgttgttc-tcctgagaatcgaacctggtatttctcgggtacgt 44969653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 50503421 - 50503485
Alignment:
Q  176 catgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtcctt 240  Q
    ||||||||||||||||  |||||||  |||| |||||||| | | |||||| |||||||||||||    
T  50503421 catgcgcactggtcaagtgttgttccccctgggaatcgaacccgatattccccggatacgtcctt 50503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 384 - 441
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  384 ttgtgaaacaaaattattttctaaaatggacaagtattatgaaacggagggagtaata 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 9933 - 9831
Alignment:
Q  138 accaacggtggacggctaatttggctcgtaagtagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| |||||||| |||||  |||||||  |||||  |||||||||||| ||| ||||||||  ||||  ||||||||| |||||||||| ||||| ||    
T  9933 accaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatacatc 9834  T
Q  238 ctt 240  Q
    |||    
T  9833 ctt 9831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 321 - 287
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  321 ttgtgaaacaaaattattctctaaaatggacaagt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 2143 - 2210
Alignment:
Q  170 tagaaacatgcgcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtc 237  Q
    ||||| ||||||| ||  |||| |||||||| | |||||||||||||| |||||| ||||||||||||    
T  2143 tagaagcatgcgcgctaatcaagcgttgttccttctgagaatcgaatccggtatttctcggatacgtc 2210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 249369 - 249432
Alignment:
Q  181 gcactggtcaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtccttagaa 244  Q
    ||||||||||| |||| |||  ||||||||||||| |||||||||| |  ||||||||||||||    
T  249369 gcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaa 249432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 23862 - 23916
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||| |||||||||    
T  23862 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggatggagtaata 23916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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