View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_59 (Length: 250)
Name: NF2562_low_59
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30725093 - 30725327
Alignment:
| Q |
1 |
caagtacatgtctacaatagcaagtggttcaggtctacatagtttcttttgttcacattatgtgatgttttggtgtaattttgtacctgcaagtaattgt |
100 |
Q |
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| T |
30725093 |
caagtacatgtctacaatagcaagtggttcaggtctacatagtttcttttgttcacattatgtgatgttttggtgtaattttgtacctgcaagtaattgt |
30725192 |
T |
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| Q |
101 |
ctgctaatgacgactatatctttaggccaaagataagttaagttagtaaattagtaccaagtttgtgtttatgtttttgtgctatgtactcggcaattaa |
200 |
Q |
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| T |
30725193 |
ctgctaatgacgactatatctataggccaaagataagttaagttagtaaattagtaccaagtttgtgtttatgtttttgtgctatgtactcggcaattaa |
30725292 |
T |
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| Q |
201 |
gatatattactataagaaaaatcatgttattttac |
235 |
Q |
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| T |
30725293 |
gatatattactataagaaaaatcatgttattttac |
30725327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 30711044 - 30711162
Alignment:
| Q |
63 |
tgatgttttggtgtaattttgtacctgcaagtaattgtctgctaatgacgactatatctttaggccaaa-gataagttaagttagtaaattagtaccaag |
161 |
Q |
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||||||| ||||||||||||| |||||||||| ||||| ||| ||||| ||||||||||| ||| ||| |||||||| |||||| |||||||||||||| |
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| T |
30711044 |
tgatgttatggtgtaattttgcacctgcaagtcattgtgtgccaatgatcactatatcttttggctaaaagataagttgagttagaaaattagtaccaag |
30711143 |
T |
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| Q |
162 |
tttgtgtttatgtttttgt |
180 |
Q |
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| T |
30711144 |
tttgtgtctatatttttgt |
30711162 |
T |
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