View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_63 (Length: 241)
Name: NF2562_low_63
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3745982 - 3745758
Alignment:
| Q |
1 |
cactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttgg |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745982 |
cactaccattgaagctaaacacaactacttcttttggtttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttgg |
3745883 |
T |
|
| Q |
101 |
aaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3745882 |
aaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatgggagtact |
3745783 |
T |
|
| Q |
201 |
attactatcttggggagaaattctg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3745782 |
attactatcttggggagaaattctg |
3745758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 3751795 - 3751575
Alignment:
| Q |
5 |
accattgaagctaaatacaactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaa |
104 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||| | ||||||||| |||| ||||||| ||| |||||||| || ||||||||||||||||||||||| |
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| T |
3751795 |
accattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaattgagttctaagcttgttggaaaa |
3751696 |
T |
|
| Q |
105 |
gctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactatta |
204 |
Q |
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|||||||| || ||||||||||||||| | ||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
3751695 |
gctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaatta |
3751596 |
T |
|
| Q |
205 |
ctatcttggggagaaattctg |
225 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
3751595 |
ctatcttggggaggaattctg |
3751575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 3762748 - 3762562
Alignment:
| Q |
31 |
cttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatc |
130 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||| ||||||||||| || |||||||||| |||||||||| ||||||||| || |||||||||||||| |
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| T |
3762748 |
cttttggtttagtccgcatgattgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatc |
3762649 |
T |
|
| Q |
131 |
aaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggag |
217 |
Q |
| |
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| |||| || | |||| | ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3762648 |
acaggaagaaataggttttcttatgacagtgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggag |
3762562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 3776838 - 3776643
Alignment:
| Q |
22 |
caactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgc |
121 |
Q |
| |
|
|||| |||| |||||| ||||| | ||| |||||||||||||||||||||||||| || |||||||||| |||||||| | ||||||||| || ||||| |
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| T |
3776838 |
caaccactttttttggtttagttagcatgattgacaaccctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgc |
3776739 |
T |
|
| Q |
122 |
atctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggag |
217 |
Q |
| |
|
|||||| ||| |||| || | |||| | ||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3776738 |
atctgcttcacaggaagaaataggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggag |
3776643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 3781142 - 3780964
Alignment:
| Q |
31 |
cttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatc |
130 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| || ||||||||||| || |
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| T |
3781142 |
cttttggtttggttaacatgattgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttc |
3781043 |
T |
|
| Q |
131 |
aaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatc |
209 |
Q |
| |
|
| | || || | |||| | ||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3781042 |
acaagaagaactaggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtactcttactatc |
3780964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 3755613 - 3755453
Alignment:
| Q |
54 |
gacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttca |
153 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| || ||||||||||||| || ||||| || |||| | | |
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|
| T |
3755613 |
gacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgctta |
3755514 |
T |
|
| Q |
154 |
tggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggg |
214 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| |
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|
| T |
3755513 |
tggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattggg |
3755453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 3767141 - 3766981
Alignment:
| Q |
54 |
gacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgttca |
153 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| || ||||||||||||| || ||||| || |||| | | |
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|
| T |
3767141 |
gacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgctta |
3767042 |
T |
|
| Q |
154 |
tggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggg |
214 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| |
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|
| T |
3767041 |
tggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattggg |
3766981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 3771420 - 3771310
Alignment:
| Q |
5 |
accattgaagctaaatacaactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaa |
104 |
Q |
| |
|
|||| |||| ||||| ||||| ||| ||||||| | |||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
3771420 |
accaatgaaactaaacacaaccactgcttttggttcagtccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaa |
3771321 |
T |
|
| Q |
105 |
gctcaagggtt |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
3771320 |
tctcaagggtt |
3771310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 25985362 - 25985557
Alignment:
| Q |
22 |
caactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgc |
121 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||||| || | ||||||||||| ||||| || ||||| |
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|
| T |
25985362 |
caaccactgcttttggtttagttaacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgc |
25985461 |
T |
|
| Q |
122 |
atctgcatcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggag |
217 |
Q |
| |
|
|| ||||| | |||| | | |||||||||||| ||||||| | |||||||| ||||| |||||||| || || ||||| |||||||| |
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|
| T |
25985462 |
ctcaacatcacaaagtgaggtagaccttatcatggctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggag |
25985557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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