View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2562_low_67 (Length: 239)

Name: NF2562_low_67
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2562_low_67
NF2562_low_67
[»] chr2 (1 HSPs)
chr2 (1-221)||(17925373-17925593)
[»] chr6 (5 HSPs)
chr6 (1-222)||(12946663-12946884)
chr6 (1-193)||(12905208-12905400)
chr6 (1-221)||(12930298-12930518)
chr6 (1-193)||(12956100-12956292)
chr6 (1-193)||(12897587-12897779)
[»] chr5 (8 HSPs)
chr5 (1-193)||(11049867-11050059)
chr5 (2-193)||(10742697-10742888)
chr5 (20-193)||(10609751-10609924)
chr5 (1-121)||(10718965-10719085)
chr5 (7-192)||(10563055-10563240)
chr5 (1-193)||(10749010-10749202)
chr5 (7-192)||(10765111-10765296)
chr5 (2-69)||(10593782-10593849)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17925593 - 17925373
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925593 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 17925494  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925493 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatga 17925394  T
Q  201 ctgttgcgcataacaatttaa 221  Q
    |||||||||||||||||||||    
T  17925393 ctgttgcgcataacaatttaa 17925373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12946663 - 12946884
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  12946663 cttctttggagaaattccacaggagttgggtcagttgctacatttgcaacaactttttctcaacaataactcttttgcaggtgagattcctacaaacctg 12946762  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatga 200  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||| ||||    
T  12946763 acatattgttccaaactcaaatttttgtttttgagtgggaaccatctcatcggtaaaataccaactgaaatcggctctttgaagaaggttcaagcaatga 12946862  T
Q  201 ctgttgcgcataacaatttaat 222  Q
    |||||||| | |||||||||||    
T  12946863 ctgttgcgaaaaacaatttaat 12946884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 12905208 - 12905400
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12905208 cttctttggagaaattcctcaggatttgggtcagttgctacatttgcaacaacttattctcagcaataattcttttgtaggtgagattcctacaaacctg 12905307  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    |||||||| || |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12905308 acatattgctccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaagcttcaa 12905400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12930298 - 12930518
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||    
T  12930298 cttctttggagaaattccacaggagttgggtcagttgctacatttgcaacatcttattctcaccaataattcttttgtaggtgagattcctacaaacctg 12930397  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatga 200  Q
    |||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||| ||      
T  12930398 acatattgctccaatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattggctctttgaaaaagcttcaagcaatat 12930497  T
Q  201 ctgttgcgcataacaatttaa 221  Q
    |||||| | ||||| ||||||    
T  12930498 ctgttgggaataaccatttaa 12930518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 12956100 - 12956292
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||| |||||| ||    
T  12956100 cttcttaggagaaattccacaggagttgggtcagttgctacatttgcaacgactttctctcagcaataactcttttgtaggtgagattccaacaaacttg 12956199  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    |||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12956200 acatattgctccaatctcaaattattgtttttgaatgggaaccatctcaatggtaaaataccaactgaaatcggctctttgaaaaagcttcaa 12956292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 12897587 - 12897779
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||    
T  12897587 cttctttggagaaattcctcaggatttgggtcagttgctacatttgcaacaccttattctcaccaataattcttttgtaggtgagattcctacaaacctg 12897686  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    |||||||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  12897687 acatattgctccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaattcggctctttgaaaaagcttcaa 12897779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 11050059 - 11049867
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    ||||| ||||||||||||||| |||||||||| ||||||||| ||| | |||||||| ||||||||||| ||| ||| ||| || ||||||||||||||     
T  11050059 cttctatggagaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctc 11049960  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    ||| |||| || ||||| |||   |||| |||| | |||||| || | ||||| || ||||||| |||||| |||||||||||||||||||||    
T  11049959 acacattgctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaatgaaattggctctttgaaaaaacttcaa 11049867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 10742888 - 10742697
Alignment:
Q  2 ttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctga 101  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |  ||||| ||||||| |||||| |||||||||||| |||    
T  10742888 ttctatggagaaattccacaagagttgggtcagttgctacaattgcaacaactttttcttactaataactcttttgcaggtgaaattcctacaaacttga 10742789  T
Q  102 catattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    ||||||| || ||||| ||| |  |   ||||   |||||| |  | ||||| |||||||||| |||||| |||| ||||||||||||||||    
T  10742788 catattgctcaaatctgaaagtcataactttggcagggaacaagttgattggcaaaataccaattgaaattggctatttgaaaaaacttcaa 10742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 10609751 - 10609924
Alignment:
Q  20 caggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgttctaatctca 119  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||| |||||| ||||||| ||| || |||||||||||||||||| |||| || |||||||    
T  10609751 caggagttgggtcagttgctacaattgcaacaactttatctcatcaataactcttttgcaggagaaattcctacaaacctgacacattgctccaatctca 10609850  T
Q  120 aattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    ||   ||   |||| | || ||| || | ||||| |||||||| | |||||| |||||||||||||| ||||||    
T  10609851 aagagttacgtttgggaggaaacaatttgattggcaaaataccgattgaaattggctctttgaaaaagcttcaa 10609924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 10719085 - 10718965
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    ||||||||||||||||||||| ||||||||  |||||||||| ||||| ||||||| ||| | |||||| ||||||| |||| | |||||||||||||||    
T  10719085 cttctttggagaaattccacatgagttgggcaagttgctacaattgcaacaactttatcttaacaataactcttttgcaggtaaaattcctacaaacctg 10718986  T
Q  101 acatattgttctaatctcaaa 121  Q
    || ||||| || |||||||||    
T  10718985 acgtattgctccaatctcaaa 10718965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 10563055 - 10563240
Alignment:
Q  7 tggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctgacatat 106  Q
    ||||||||| |||| |||||||||||||||||||||  |||| || |||| ||||   ||||| || |||||||| || |||||||||||| ||||||||    
T  10563055 tggagaaatcccaccggagttgggtcagttgctacaactgcaacacctttatctccttaataactcgtttgtaggagaaattcctacaaacttgacatat 10563154  T
Q  107 tgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttca 192  Q
    || || ||||||| |   ||| ||||| | |||||| |  | ||||| |||||||||| |||||| |||||||||||||| |||||    
T  10563155 tgctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttca 10563240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10749202 - 10749010
Alignment:
Q  1 cttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctg 100  Q
    |||| |||||||||| ||| | |||||||||| ||||||||| ||||| ||||||  ||||| |||||| || || | ||| || |||||| ||||| ||    
T  10749202 cttccttggagaaatcccagaagagttgggtcggttgctacaattgcaacaacttgatctcatcaataactcgttcgcaggagaaattccttcaaacttg 10749103  T
Q  101 acatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaa 193  Q
    |||||||| || |||||||||   ||   | || | |||||| || | ||||| |||||||||| |||||| |||||||||||||| ||||||    
T  10749102 acatattgctccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaattgaaattggctctttgaaaaagcttcaa 10749010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 10765296 - 10765111
Alignment:
Q  7 tggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctgacatat 106  Q
    ||||||||||||||||||||| ||||||||||||||  |||| ||||||| ||||   ||||| || |||  ||| || ||||||| |||| |||| |||    
T  10765296 tggagaaattccacaggagttcggtcagttgctacaactgcaacaactttatctccttaataactcgtttacaggagaaattcctataaacttgacgtat 10765197  T
Q  107 tgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttca 192  Q
    || || ||||||| |   ||| ||||| | |||||| |  | |  || ||||||| || |||||| |||||||||||||| |||||    
T  10765196 tgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaaaccttca 10765111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 10593782 - 10593849
Alignment:
Q  2 ttctttggagaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataa 69  Q
    ||||||||| ||||||||||||| ||||| || ||| |||| ||||||  |||||||||||| |||||    
T  10593782 ttctttggaaaaattccacaggaattggggcaattgttacaattgcagggactttttctcagtaataa 10593849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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