View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_7 (Length: 517)
Name: NF2562_low_7
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 498
Target Start/End: Complemental strand, 54852465 - 54851983
Alignment:
| Q |
13 |
aaaataccacaaaataaactaagatatgagccaatactcgacaaaaactcccaatgctccccagctgcaactcaaaatttcgaacctcaaagatcaaata |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54852465 |
aaaataccacaaaataatctaagatatgagccaatactcgacaaaaactcccaatgctccccagctgcaactcaaaatttcgaacctcaaagatcaaata |
54852366 |
T |
|
| Q |
113 |
ccatcaccactaaatacaaagcatgctatacatatccacagcggaactatccgactattgcccaaccgagacagcaaaagcagaaatagtgctatcccaa |
212 |
Q |
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||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54852365 |
ccatcaccactaaatacaaagtatgctacacatatccacggcggaactatccgactattgcccaaccgagacagcaaaagcagaaatagtgctatcccaa |
54852266 |
T |
|
| Q |
213 |
ccaagaaacagcgcacaaaacctgtagactatatacacagtccacaagaagccgcacaaccacactgtaaannnnnnnagtccacaagattacttgatac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
54852265 |
---agaaacagcgcacaaaacctgtagactatatacacagtccacaagaagccgcacaaccacactgtaaacccccccagtccacaggattacttgatac |
54852169 |
T |
|
| Q |
313 |
aaaataccacaaatcaaattgtgctgaaaattcaattcactctatcgcccaaacacaccttcgaattcagacagtagtgatacatgttgtaatctaaact |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54852168 |
aaaataccacaaatcaaattgtgctgaaaattcaattcactctatcgcccagacacaccttcggattcagacagtagtgatacatgttgtaatctaaact |
54852069 |
T |
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| Q |
413 |
cttagttctaaaacgcaaccaattccaagatacaactttcacttcctccataatttttctgatgttaatttctttactatggaaac |
498 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54852068 |
cttagctctaaaacgcagccaattccaagatacaactttcacttcctccataatttttctgatgttaatttctttactatggaaac |
54851983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 29121092 - 29121220
Alignment:
| Q |
334 |
tgctgaaaattcaattcactctatcgcccaaacacaccttcgaattcagacagtagtgatacatgttgtaatctaaactcttagttctaaaacgcaacca |
433 |
Q |
| |
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|||||||||||||| || ||||||| | |||| || ||| ||||| ||| ||||| ||||||| ||||||||||| |||||| ||||||||| ||| |
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| T |
29121092 |
tgctgaaaattcaagtcttcatatcgcctagacacgccctcggattcaaacaccagtgagacatgttataatctaaacttttagttttaaaacgcatcca |
29121191 |
T |
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| Q |
434 |
attccaagatacaactttcacttcctcca |
462 |
Q |
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| T |
29121192 |
tttccaagatacaatcttcacatcctcca |
29121220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 1917396 - 1917314
Alignment:
| Q |
405 |
tctaaactcttagttctaaaacgcaaccaattccaagatacaactttcacttcctccataatttttctgatgttaatttcttta |
488 |
Q |
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|||||||| |||||| ||||||||| ||| ||||||||||||| ||||| ||||||| |||||||| ||| ||||||||||| |
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| T |
1917396 |
tctaaacttttagttttaaaacgcagccagttccaagatacaatcttcacatcctccaccatttttct-atgctaatttcttta |
1917314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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