View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2562_low_72 (Length: 230)
Name: NF2562_low_72
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 39082449 - 39082236
Alignment:
| Q |
1 |
attagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082449 |
attagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcacca |
39082350 |
T |
|
| Q |
101 |
tatattgtaatcccatcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082349 |
tatattgtaatcccatcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgt |
39082250 |
T |
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| Q |
201 |
gtataccatgaatt |
214 |
Q |
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|||||||||||||| |
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| T |
39082249 |
gtataccatgaatt |
39082236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 31727086 - 31726939
Alignment:
| Q |
1 |
attagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727086 |
attagaaatagtaacagccgttgatccatgaacaacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcacca |
31726987 |
T |
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| Q |
101 |
tatattgtaatcccatcaccatccgatctttctttcctaacacgatgg |
148 |
Q |
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| T |
31726986 |
tagattgtgatcccatcaccatccgatctttctttcctaacacgatgg |
31726939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 43131409 - 43131344
Alignment:
| Q |
26 |
ccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatga |
91 |
Q |
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||||||| | ||||||||||||| ||| ||| || ||||| ||||||||||||||||||| |||| |
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| T |
43131409 |
ccatgaatagcatcaatcaaaccatcattacagttagacaaagaacaatgatccacccaaacatga |
43131344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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