View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2562_low_9 (Length: 494)
Name: NF2562_low_9
Description: NF2562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2562_low_9 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 8533610 - 8533147
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8533610 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
8533511 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaagaattggtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8533510 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagtttcttctatgatgtattgccatacttcatttgaagaattggtg |
8533411 |
T |
|
| Q |
213 |
ggttctaattctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgaga |
312 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8533410 |
ggttataattctatattttatgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgaga |
8533311 |
T |
|
| Q |
313 |
tacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8533310 |
tacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactatgtgtgcttaaactctctggtaaaacagatttagtgccatctca |
8533211 |
T |
|
| Q |
413 |
ttatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggtatt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8533210 |
ttatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggtatt |
8533147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 20788219 - 20787763
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | |||||||||||| || ||||||||||||| | ||||| ||| |||| |||||| |||| ||| |||| | ||||| ||||| ||||| |
|
|
| T |
20788219 |
aatatgataatgcattgaaagacaaaattgaaaaggaaaaaattgctgactttcgttcttttaatacagttattttttgtattagtcactttggttttga |
20788120 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggt |
211 |
Q |
| |
|
| |||||||||||| |||||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| |
|
|
| T |
20788119 |
gttccaattccaaaaagcatttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattgga |
20788021 |
T |
|
| Q |
212 |
gggttctaattctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgag |
311 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||||||| |||| |||||| | || || | ||||| || ||||||||||||||||| | |
|
|
| T |
20788020 |
gggtttggattcaatattttctgttacagaaagtaagaaagtatatgacacgatgaaagatattgtgttgatggtgttcttcaatgaaaaagactttgtg |
20787921 |
T |
|
| Q |
312 |
atacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctc |
411 |
Q |
| |
|
|| |||| || |||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||| || ||||||||||| ||||||||| |
|
|
| T |
20787920 |
ttaaaatgcacctgctgcttgtttgaatttaaaggcattttatgtaggcacatcctttgcgtgcttaagctcatagggaaaacagattttgtgccatcta |
20787821 |
T |
|
| Q |
412 |
attatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatg |
469 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
20787820 |
attatattttggcacggtggaggaaggatataaagcggaggtatacacttattaaatg |
20787763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 23 - 473
Target Start/End: Complemental strand, 24185942 - 24185492
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || || ||| |||| |||||| | || ||||||||| | ||||| ||||||||||||| |||||| |
|
|
| T |
24185942 |
tgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcgtttaatacggttattgcttgtattagtcactttggctttgaattccaattc |
24185843 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggtgggttctaat |
221 |
Q |
| |
|
|||||| | |||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| ||||| || |
|
|
| T |
24185842 |
caaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattggagggtttggat |
24185744 |
T |
|
| Q |
222 |
tctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgagatacaatgta |
321 |
Q |
| |
|
|| ||||||||||| | ||||||||||||| |||| ||||| |||||| | || |||| |||| || ||||||||||||||| | || |||| | |
|
|
| T |
24185743 |
tcaatattttctgttacagaaagtaagaaattatatgacaagatgaaagatattgtgttcatggtgctcttcaatgaaaaagacttcatgttaaaatgca |
24185644 |
T |
|
| Q |
322 |
cttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatatttt |
421 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||| || ||||||||||| ||||||||| |||||||||| |
|
|
| T |
24185643 |
cctgccacttgtttgaatttaaaggcattttatgtaggcacatcctttgtgtgcttaagctcatagggaaaacagatttcgtgccatctaattatatttt |
24185544 |
T |
|
| Q |
422 |
ttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| | ||||||||| ||||||||||| | ||||| |||||||||||||| |
|
|
| T |
24185543 |
ggcacggtggaggaaagatataaagcggaggtatacacttattaaatgtggt |
24185492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 26304193 - 26304435
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26304193 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaattgcttgtgtaagtcattttggctttga |
26304292 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaagaattggtg |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||| | | | |
|
|
| T |
26304293 |
gtcacaattccaaaaattatttaccaatgcaaaattcaaagaatttcaagtagaagttgcctctatgatctattgcaatacttcattttaagattcagag |
26304392 |
T |
|
| Q |
213 |
ggttctaattctatattttctgtgatagaaagtaagaaagtat |
255 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
26304393 |
ggtttaaattctatattttctgtgattgaaagtgagaaagtat |
26304435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 261 - 473
Target Start/End: Original strand, 26304618 - 26304831
Alignment:
| Q |
261 |
aaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaaga-ctttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtaga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
26304618 |
aaagcaaaagatgtggtattcaaggtgtcctagaatgaaaaaaaactttgagatacaatcaacttgctgcttattcgagtttaaagacattttgtttaga |
26304717 |
T |
|
| Q |
360 |
cacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacag |
459 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||| |
|
|
| T |
26304718 |
cacatcctctgtgtgcttaaactctctagtaaaacagattaagtgccatctcattatattttttctcagtggaggaagaatataaatcaacggcatacaa |
26304817 |
T |
|
| Q |
460 |
ttattaaatgtggt |
473 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26304818 |
ttattaaatgtggt |
26304831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 49961057 - 49961517
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||| || ||||| ||| |||| |||||| |||| ||| ||||| | ||||| ||||||||||| |
|
|
| T |
49961057 |
aatatgataatgcattgaaagataagattgaaaaggaaaacattgctgactttcgttcttttaatacagttatttcttgtattagtcactttggctttga |
49961156 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggt |
211 |
Q |
| |
|
| |||||||||||| |||||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| |
|
|
| T |
49961157 |
gttccaattccaaaaagcatttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattgga |
49961255 |
T |
|
| Q |
212 |
gggttctaattctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgag |
311 |
Q |
| |
|
||||| |||| ||||||| ||| | | | |||||||||||||| ||| | |||||| | || |||| ||||| || |||||||||||||||| | |
|
|
| T |
49961256 |
gggtttggattcaatattttttgttacatagagtaagaaagtatatgaccagatgaaagatattgtgttcatggtgttcttcaatgaaaaagactttatg |
49961355 |
T |
|
| Q |
312 |
atacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctc |
411 |
Q |
| |
|
|| |||| || |||||||| ||||| |||||||||||||| ||||| ||||| ||| |||||||||| ||| ||| ||||||||||| ||| ||||| |
|
|
| T |
49961356 |
ttaaaatgcacctgctgcttgtttgaatttaaaggcattttatgtaggcacatccttcgtgtgcttaagctcattgggaaaacagatttcgtgtcatcta |
49961455 |
T |
|
| Q |
412 |
attatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||| | | ||||| |||||||||||||| |
|
|
| T |
49961456 |
attatattttggcacggtggaggaaggatataaagtggaggtatacacttattaaatgtggt |
49961517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 23 - 473
Target Start/End: Complemental strand, 409457 - 409007
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || || ||| |||| |||||| | || ||||||||| | ||||| ||||||||||||| |||||| |
|
|
| T |
409457 |
tgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttattgcttgtattagtcactttggctttgaattccaattc |
409358 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggtgggttctaat |
221 |
Q |
| |
|
|||||| | |||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| || || || |
|
|
| T |
409357 |
caaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattggaggatttggat |
409259 |
T |
|
| Q |
222 |
tctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgagatacaatgta |
321 |
Q |
| |
|
|| ||||||||||| | |||||||||||||||||| ||||| |||||| | || |||| |||| || ||||||||||||||| | || |||| | |
|
|
| T |
409258 |
tcaatattttctgttacagaaagtaagaaagtatatgacaagatgaaagatattgtgttcatggtgctcttcaatgaaaaagacttcatgttaaaatgca |
409159 |
T |
|
| Q |
322 |
cttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatatttt |
421 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||| || ||||||||||| ||||||||| |||||||||| |
|
|
| T |
409158 |
cctgccacttgtttgaatttaaaggcattttatgtaggcacatcctttgtgtgcttaagctcatagggaaaacagatttcgtgccatctaattatatttt |
409059 |
T |
|
| Q |
422 |
ttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| | ||||||||| ||||||||||| | ||| | |||||||||||||| |
|
|
| T |
409058 |
ggcacggtggaggaaagatataaagcggaggtatatacttattaaatgtggt |
409007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 23 - 473
Target Start/End: Original strand, 414485 - 414935
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || || ||| |||| |||||| | || ||||||||| | ||||| ||||||||||||| |||||| |
|
|
| T |
414485 |
tgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttattgcttgtattagtcactttggctttgaattccaattc |
414584 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggtgggttctaat |
221 |
Q |
| |
|
|||||| | |||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| || || || |
|
|
| T |
414585 |
caaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattggaggatttggat |
414683 |
T |
|
| Q |
222 |
tctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgagatacaatgta |
321 |
Q |
| |
|
|| ||||||||||| | |||||||||||||||||| ||||| |||||| | || |||| |||| || ||||||||||||||| | || |||| | |
|
|
| T |
414684 |
tcaatattttctgttacagaaagtaagaaagtatatgacaagatgaaagatattgtgttcatggtgctcttcaatgaaaaagacttcatgttaaaatgca |
414783 |
T |
|
| Q |
322 |
cttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatatttt |
421 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||| || ||||||||||| ||||||||| |||||||||| |
|
|
| T |
414784 |
cctgccacttgtttgaatttaaaggcattttatgtaggcacatcctttgtgtgcttaagctcatagggaaaacagatttcgtgccatctaattatatttt |
414883 |
T |
|
| Q |
422 |
ttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| | ||||||||| ||||||||||| | ||| | |||||||||||||| |
|
|
| T |
414884 |
ggcacggtggaggaaagatataaagcggaggtatatacttattaaatgtggt |
414935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 448
Target Start/End: Original strand, 40249822 - 40250247
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||| ||||| || ||||||||||||| ||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||| || ||| |
|
|
| T |
40249822 |
tgcattgaatgataaaatcgaaaaggaaagcatggctgattttgattcatttaactcaacaattgcttgtgtgagtcattttggctttgaagtccatttc |
40249921 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaagaattggtgggttctaatt |
222 |
Q |
| |
|
|| ||| ||||||||| ||| ||||||||||||||||||||||| || ||||||||| ||||| ||||| |||||| ||||| || | |||| |
|
|
| T |
40249922 |
cagaaagcatttaccattgccaaattcaaagaatttcaagtagaggtcttttctatgatatattgtaatactagctttgaaagattggaggacttgaatt |
40250021 |
T |
|
| Q |
223 |
ctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgagatacaatgtac |
322 |
Q |
| |
|
||||||| ||||| | |||| |||||||||| | || |||| ||||| ||||| || ||||| || | ||||||||| ||||| | | || || || |
|
|
| T |
40250022 |
ctatattctctgttactgaaaataagaaagtaaaagagaaagttaaagacgtggtgtttaaggtatctttcaatgaaaaggacttcaatttgcagtgcac |
40250121 |
T |
|
| Q |
323 |
ttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatattttt |
422 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||| ||| |||||||||| | |||| ||| ||||||||| |
|
|
| T |
40250122 |
gtgctgcttatttgagtttaaaggaattttatgcagacacattctttgtgtgcttaagctcattggcaaaacagattcaatgccctctttttatattttg |
40250221 |
T |
|
| Q |
423 |
tctcagtggaggaaggatataaagcg |
448 |
Q |
| |
|
| | |||||||||| || ||||||| |
|
|
| T |
40250222 |
ccacggtggaggaagtatgtaaagcg |
40250247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 23 - 473
Target Start/End: Original strand, 24343962 - 24344412
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || || ||| |||| |||||| | || ||||||||| | ||||| ||||||||||| | |||||| |
|
|
| T |
24343962 |
tgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttattgcttgtattagtcactttggctttgagttccaattc |
24344061 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggtgggttctaat |
221 |
Q |
| |
|
|||||| | |||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| || || || |
|
|
| T |
24344062 |
caaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattggaggttttggat |
24344160 |
T |
|
| Q |
222 |
tctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgagatacaatgta |
321 |
Q |
| |
|
|| ||||||||||| | |||||||||||||||||| ||||| |||||| | || |||| |||| || ||||||||||||||| | || |||| | |
|
|
| T |
24344161 |
tcaatattttctgttacagaaagtaagaaagtatatgacaagatgaaagatattgtgttcatggtgctcttcaatgaaaaagacttcatgttaaaatgca |
24344260 |
T |
|
| Q |
322 |
cttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatatttt |
421 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||| || ||||||||||| ||||||||| |||||||||| |
|
|
| T |
24344261 |
cctgccacttgtttgaatttaaaggcattttatgtaggcacatcctttgtgtgcttaagctcatagggaaaacagatttcgtgccatctaattatatttt |
24344360 |
T |
|
| Q |
422 |
ttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| | ||||||||| ||||||||||| | ||||| |||||||||||||| |
|
|
| T |
24344361 |
ggcacggtggaggaaagatataaagcggaggtatacacttattaaatgtggt |
24344412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 473
Target Start/End: Original strand, 24356340 - 24356790
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || || ||| |||| |||||| | || ||||||||| | ||||| ||||||||||||| |||||| |
|
|
| T |
24356340 |
tgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttattgcttgtattagtcactttggctttgaattccaattc |
24356439 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggtgggttctaat |
221 |
Q |
| |
|
|||||| | |||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| || || || |
|
|
| T |
24356440 |
caaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattggaggttttggat |
24356538 |
T |
|
| Q |
222 |
tctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgagatacaatgta |
321 |
Q |
| |
|
|| ||||||||||| | ||||||||||||| |||| ||||| |||||| | || |||| |||| || ||||||||||||||| | || |||| | |
|
|
| T |
24356539 |
tcaatattttctgttacagaaagtaagaaattatatgacaagatgaaagatattgtgttcatggtgctcttcaatgaaaaagacttcatgttaaaatgca |
24356638 |
T |
|
| Q |
322 |
cttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctcattatatttt |
421 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||| || ||||||||||| ||||||||| |||||||||| |
|
|
| T |
24356639 |
cctgccacttgtttgaatttaaaggcattttatgtaggcacatcctttgtgtgcttaagctcatagggaaaacagatttcgtgccatctaattatatttt |
24356738 |
T |
|
| Q |
422 |
ttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| | ||||||||| ||||||||||| | ||| | |||||||||||||| |
|
|
| T |
24356739 |
ggcacggtggaggaaagatataaagcggaggtatatacttattaaatgtggt |
24356790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 41699658 - 41699836
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| | |||||||||| ||||||| ||| | | ||||||||| ||||||||||||| ||||| |
|
|
| T |
41699658 |
aatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattattgcttgtataagtcattttggatttga |
41699757 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccat |
191 |
Q |
| |
|
||| ||||| ||||| ||| |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
41699758 |
atctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgtactgccat |
41699836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 41705252 - 41705430
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| | |||||||||| ||||||| ||| | | ||||||||| ||||||||||||| ||||| |
|
|
| T |
41705252 |
aatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattattgcttgtataagtcattttggatttga |
41705351 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccat |
191 |
Q |
| |
|
||| ||||| ||||| ||| |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
41705352 |
atctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgtactgccat |
41705430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 49245427 - 49245516
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49245427 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcagggatgattttggttcatttaattcagtaattgcttgtgtaagtcatt |
49245516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 472
Target Start/End: Original strand, 14123259 - 14123438
Alignment:
| Q |
293 |
caatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaa |
392 |
Q |
| |
|
|||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||| ||| | ||| | |||||| |
|
|
| T |
14123259 |
caatgagaaagacttcgaaatacaatgtgcttgctgcttatttgagtttaaaggcattttatgcagacacatcctttgtgttcttcagctcacaggtaaa |
14123358 |
T |
|
| Q |
393 |
acagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtgg |
472 |
Q |
| |
|
|| || | |||| | ||| ||||||||| || ||||||||| ||||| ||| | |||| ||| ||||||||||||| |
|
|
| T |
14123359 |
actgagtcagtgtcgtcttgttatattttgtcaaggtggaggaatgatattaagtggagacacacacttattaaatgtgg |
14123438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 279 - 473
Target Start/End: Original strand, 41699924 - 41700118
Alignment:
| Q |
279 |
ttcaaggtgtcctacaatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgctta |
378 |
Q |
| |
|
|||||||| | || |||||| ||||||||||| |||| |||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| |||| |
|
|
| T |
41699924 |
ttcaaggtattcttcaatgagaaagactttgaaatacgatgtacatgctgtttatttgagtttaagggtattttatgtagacatatcctttgtgttctta |
41700023 |
T |
|
| Q |
379 |
aactctctggtaaaacagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| ||| | | ||||||||| | |||||| ||| |||||| || | |||||||||||||| |||||| || | ||| |||||||| ||||| |
|
|
| T |
41700024 |
agctcacagctaaaacagagtcagtgccctcttgttatatattgccgagatggaggaaggatattaagcgaagatacacacttattaaaagtggt |
41700118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 279 - 473
Target Start/End: Original strand, 41705518 - 41705712
Alignment:
| Q |
279 |
ttcaaggtgtcctacaatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgctta |
378 |
Q |
| |
|
|||||||| | || |||||| ||||||||||| |||| |||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| |||| |
|
|
| T |
41705518 |
ttcaaggtattcttcaatgagaaagactttgaaatacgatgtacatgctgtttatttgagtttaagggtattttatgtagacatatcctttgtgttctta |
41705617 |
T |
|
| Q |
379 |
aactctctggtaaaacagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| ||| | | ||||||||| | |||||| ||| |||||| || | |||||||||||||| |||||| || | ||| |||||||| ||||| |
|
|
| T |
41705618 |
agctcacagctaaaacagagtcagtgccctcttgttatatattgccgagatggaggaaggatattaagcgaagatacacacttattaaaagtggt |
41705712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 5404249 - 5404354
Alignment:
| Q |
90 |
tgtgtaagtcattttggctttgaatcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgcc |
189 |
Q |
| |
|
|||| ||||||||||||||| | || |||||||||||| |||| || || ||||||||||| |||| |||||| ||||||||| |||||| |||| | |
|
|
| T |
5404249 |
tgtgcaagtcattttggcttatagtctcaattccaaaaaacattcacaaacgcaaaattcaatgaatctcaagtggaagttgctcttatgatttattatc |
5404348 |
T |
|
| Q |
190 |
atactt |
195 |
Q |
| |
|
|||||| |
|
|
| T |
5404349 |
atactt |
5404354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 15048770 - 15048310
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | |||||||||||| || ||||||||||||| || ||||| ||| |||| |||||| |||| ||| ||||| | ||||| ||||||||||| |
|
|
| T |
15048770 |
aatatgataatgcattgaaagacaaaattgaaaaggaaaacattgctgactttcgttcttttaatacagttatttcttgtattagtcactttggctttga |
15048671 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccatacttcatttgaaga-attggt |
211 |
Q |
| |
|
| |||||||||||| |||||||||||||||| || | ||||| ||| | ||| | |||||||||||||| || ||| | | ||| || | ||||| |
|
|
| T |
15048670 |
gttccaattccaaaaagcatttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcatg-tttcaacagattgga |
15048572 |
T |
|
| Q |
212 |
gggttctaattctatattttctgtgatagaaagtaagaaagtatacgacaaagcaaaagatgtggtattcaaggtgtcctacaatgaaaaagactttgag |
311 |
Q |
| |
|
||||| |||| ||||||| ||| | |||||||||||||||||| |||| |||||| | || || | ||||| || ||||||||||||||||| | |
|
|
| T |
15048571 |
gggtttggattcaatattttatgttacagaaagtaagaaagtatatgacacgatgaaagatattgtgttgatggtgttcttcaatgaaaaagactttgtg |
15048472 |
T |
|
| Q |
312 |
atacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaacagatttagtgccatctc |
411 |
Q |
| |
|
|| |||| || |||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||| || ||||||||||| ||||||||| |
|
|
| T |
15048471 |
ttaaaatgcacctgctgcttgtttgaatttaaaggcattttatgtaggcacatcctttgcgtgcttaagctcatagggaaaacagatttcgtgccatcta |
15048372 |
T |
|
| Q |
412 |
attatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
15048371 |
attatattttggcacggtggaggaaggatataaagcggaggtatacacttattaaatgtggt |
15048310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 296 - 473
Target Start/End: Original strand, 38177550 - 38177727
Alignment:
| Q |
296 |
tgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaaaca |
395 |
Q |
| |
|
|||||||||||||| | || |||| || |||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||| ||| |||||| |
|
|
| T |
38177550 |
tgaaaaagactttgtgttaaaatgcacctgctgcttgtttgaatttaaaggcattttatgtaggcacatcctttgtgtgcttaagctcattgggaaaaca |
38177649 |
T |
|
| Q |
396 |
gatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
||||| ||| ||||| |||||||||| | | |||||||||||||||||| || | ||||| |||||||||||||| |
|
|
| T |
38177650 |
gatttcgtgtcatctaattatattttggcacggtggaggaaggatataaaacggaggtatacacttattaaatgtggt |
38177727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 1178315 - 1178398
Alignment:
| Q |
101 |
ttttggctttgaatcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgta |
184 |
Q |
| |
|
||||||||| || || |||||||||| ||||||||||||||||||| |||| ||||||| | ||| |||||||||||||||| |
|
|
| T |
1178315 |
ttttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcaaattgaaattgcttctatgatgta |
1178398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 35050027 - 35050195
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||| || |||||||||| | |||| |||||||||||| |
|
|
| T |
35050027 |
aatatgacaatgcgttgaaagataaaattgaaaaggaaagcatggctgattttgtttcatttaatacaacaattgcttgtattagtctttttggctttga |
35050126 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgat |
181 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
35050127 |
gtctcaattccaaaaagcatttaccaatgcaaaattcaaagaatttcaaattgaaattgcttctatgat |
35050195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 293 - 472
Target Start/End: Original strand, 35050307 - 35050486
Alignment:
| Q |
293 |
caatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaa |
392 |
Q |
| |
|
|||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||| || ||||| || |||||||| ||| | ||| | |||||| |
|
|
| T |
35050307 |
caatgagaaagacttcgaaatacaatgtgcttgctgcttatttgagtttaaaggcattttatgcagacatatcctttgtgttcttcagctcacaggtaaa |
35050406 |
T |
|
| Q |
393 |
acagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtgg |
472 |
Q |
| |
|
|| || | ||| || ||| ||||||||| || ||||||||||||||| ||||| |||| ||| ||||||||||||| |
|
|
| T |
35050407 |
actgagtcagtaccgtcttgttatattttgtcaaggtggaggaaggatattaagcggagacacacacttattaaatgtgg |
35050486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 23557941 - 23558119
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| | |||||||||| ||||||| ||| | | ||||||||| ||||||||||||| ||||| |
|
|
| T |
23557941 |
aatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattattgcttgtataagtcattttggatttga |
23558040 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccat |
191 |
Q |
| |
|
||| ||||| ||||| ||| |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
23558041 |
atctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgtactgccat |
23558119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 467
Target Start/End: Original strand, 23558207 - 23558395
Alignment:
| Q |
279 |
ttcaaggtgtcctacaatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgctta |
378 |
Q |
| |
|
|||||||| | || |||||| ||||||||||| |||| |||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| |||| |
|
|
| T |
23558207 |
ttcaaggtattcttcaatgagaaagactttgaaatacgatgtacatgctgtttatttgagtttaagggtattttatgtagacatatcctttgtgttctta |
23558306 |
T |
|
| Q |
379 |
aactctctggtaaaacagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaa |
467 |
Q |
| |
|
| ||| | | ||||||||| | |||||| ||| |||||| || | |||||||||||||| |||||| || ||||| |||||||| |
|
|
| T |
23558307 |
agctcacagctaaaacagagtcagtgccctcttgttatatattgccgagatggaggaaggatattaagcgaagatatacacttattaaa |
23558395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 14663487 - 14663390
Alignment:
| Q |
90 |
tgtgtaagtcattttggctttgaatcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattg |
187 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| |||||||||||||||| |||||||| | ||| ||||| ||| ||||||||||||||| |
|
|
| T |
14663487 |
tgtgtaagtctctttggctttgagtctcaattccaaaaggcatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattg |
14663390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 54077292 - 54077114
Alignment:
| Q |
13 |
aatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttga |
112 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| | |||||||||| ||||||| ||| | | ||||||||| ||||||||||||| ||||| |
|
|
| T |
54077292 |
aatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattattgcttgtataagtcattttggatttga |
54077193 |
T |
|
| Q |
113 |
atcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtattgccat |
191 |
Q |
| |
|
||| ||||| ||||| ||| |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
54077192 |
atctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgtactgccat |
54077114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 472
Target Start/End: Complemental strand, 20007107 - 20006928
Alignment:
| Q |
293 |
caatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgcttaaactctctggtaaa |
392 |
Q |
| |
|
|||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||| ||| | ||| | |||||| |
|
|
| T |
20007107 |
caatgagaaagacttcgaaatacaatgtgcttgctgcttatttgagtttaaaggcattttatgcagacacatcctttgtgttcttcagctcacaggtaaa |
20007008 |
T |
|
| Q |
393 |
acagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtgg |
472 |
Q |
| |
|
|| || | |||| | ||| ||||||||| || ||||||||| ||||| ||| | |||| ||| ||||||||||||| |
|
|
| T |
20007007 |
actgagtcagtgtcgtcttgttatattttgtcaaggtggaggaatgatattaagtggagacacacacttattaaatgtgg |
20006928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 473
Target Start/End: Complemental strand, 54077026 - 54076832
Alignment:
| Q |
279 |
ttcaaggtgtcctacaatgaaaaagactttgagatacaatgtacttgctgcttatttgagtttaaaggcattttgtgtagacacatactttgtgtgctta |
378 |
Q |
| |
|
|||||||| | || |||||| ||||||||||| |||| |||||| |||| |||||||||||||| || ||||| |||||||| || |||||||| |||| |
|
|
| T |
54077026 |
ttcaaggtattcttcaatgagaaagactttgaaatacgatgtacatgctttttatttgagtttaagggtattttatgtagacatatcctttgtgttctta |
54076927 |
T |
|
| Q |
379 |
aactctctggtaaaacagatttagtgccatctcattatattttttctcagtggaggaaggatataaagcgacgacatacagttattaaatgtggt |
473 |
Q |
| |
|
| ||| | | ||||||||| | |||||| ||| |||||| || | |||||||||||||| |||||| || | ||| |||||||| ||||| |
|
|
| T |
54076926 |
agctcacagctaaaacagagtcagtgccctcttgttatatattgccgagatggaggaaggatattaagcgaagatacacacttattaaaagtggt |
54076832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 44240 - 44402
Alignment:
| Q |
23 |
tgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaattgcttgtgtaagtcattttggctttgaatcacaattc |
122 |
Q |
| |
|
||||||||||||||| || |||||||||| | |||| ||||| ||||||| ||| | | ||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
44240 |
tgcattgaaagataaaat-gaaaaggaaaatagggctcattttagttcattcaatataattattgcttgtataagtcattttggatttgaatctcaattt |
44338 |
T |
|
| Q |
123 |
caaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagttgcttctatgatgtatt |
186 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
44339 |
caaaaggcatataccaatgcaaaattcaaagagtttcaagtagaaggcgcttttatgatgtatt |
44402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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