View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2563_high_10 (Length: 388)

Name: NF2563_high_10
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2563_high_10
NF2563_high_10
[»] chr5 (6 HSPs)
chr5 (15-371)||(38378471-38378827)
chr5 (15-371)||(8383659-8384013)
chr5 (35-327)||(40090854-40091145)
chr5 (31-308)||(16818357-16818632)
chr5 (15-57)||(7725539-7725581)
chr5 (15-57)||(38378220-38378262)
[»] chr2 (1 HSPs)
chr2 (15-341)||(32447621-32447945)
[»] chr4 (9 HSPs)
chr4 (15-327)||(55157360-55157669)
chr4 (15-327)||(48007280-48007590)
chr4 (22-323)||(8179905-8180204)
chr4 (17-371)||(8345954-8346306)
chr4 (143-327)||(46882801-46882983)
chr4 (49-262)||(3955324-3955535)
chr4 (49-262)||(47249327-47249538)
chr4 (15-57)||(13557448-13557490)
chr4 (21-57)||(24972264-24972300)
[»] chr1 (9 HSPs)
chr1 (15-327)||(52053853-52054163)
chr1 (38-320)||(30332387-30332667)
chr1 (21-163)||(18459581-18459721)
chr1 (49-262)||(25623675-25623886)
chr1 (16-58)||(18459738-18459780)
chr1 (21-58)||(49915875-49915912)
chr1 (21-57)||(10544164-10544200)
chr1 (21-57)||(17414743-17414779)
chr1 (21-57)||(17415350-17415386)
[»] chr3 (4 HSPs)
chr3 (18-371)||(22200291-22200646)
chr3 (15-325)||(840851-841164)
chr3 (49-262)||(10533237-10533448)
chr3 (15-57)||(931611-931653)
[»] chr6 (4 HSPs)
chr6 (48-320)||(33362232-33362502)
chr6 (21-263)||(12309940-12310182)
chr6 (15-97)||(17945287-17945368)
chr6 (21-57)||(12309899-12309935)
[»] chr8 (4 HSPs)
chr8 (48-320)||(32307004-32307274)
chr8 (20-147)||(12755366-12755490)
chr8 (15-57)||(8051921-8051963)
chr8 (128-260)||(7231634-7231766)
[»] chr7 (6 HSPs)
chr7 (15-195)||(21995283-21995461)
chr7 (15-58)||(13298776-13298819)
chr7 (264-335)||(21998884-21998955)
chr7 (15-57)||(4125481-4125523)
chr7 (15-57)||(9691071-9691113)
chr7 (15-57)||(24507852-24507894)
[»] scaffold0009 (1 HSPs)
scaffold0009 (49-262)||(91940-92151)
[»] scaffold0276 (1 HSPs)
scaffold0276 (15-57)||(2095-2137)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 38378827 - 38378471
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  38378827 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgataagtgttgagactatctctctgaaatcg 38378728  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38378727 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 38378628  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38378627 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 38378528  T
Q  315 ggctttgatgatcaagcactggagttccgacagtaggttttgaagccaacaatattc 371  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  38378527 ggctttgatgatcaagcactggagttccgacagtaggctttgaagccaacaagattc 38378471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 8384013 - 8383659
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||  || || ||||| ||| || |||||||||| |  ||||||||||| |  ||||||     
T  8384013 aatatattaataatttatacaatgaatattttatattctaatatgtctccatagtcgaaatggaaggttgacgaatactgagactatcttt--gaaatca 8383916  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    |||||||||||||||||||||   ||||||||||| ||| ||||||||| ||||||||| ||||||| ||||  ||||| ||| ||||||||||||||||    
T  8383915 tcaaataattgcagcggaagattcttggtgaaaatgtcagctatttgatagcgagatgggacatgtagaacacatacttaacctttagcaaccttttcac 8383816  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 314  Q
     |||||||| |||||| |||| || |||||||||||||| ||||||||| ||||||| ||| |  |||| ||  |||||||||||||| |||||||| ||    
T  8383815 acacaaaatagatatctattttaaagtgttttgtgcgttgatgttggatgggattacctgaaaaataaataaccctaacattgtcacagtagacaagagt 8383716  T
Q  315 ggctttgatgatcaagcactggagttccgacagtaggttttgaagccaacaatattc 371  Q
    | ||||||||||| | |||| ||||||  |||  | |||| ||||||||||| ||||    
T  8383715 gactttgatgatctaacactagagttctaacaacaagtttcgaagccaacaagattc 8383659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 35 - 327
Target Start/End: Original strand, 40090854 - 40091145
Alignment:
Q  35 aatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaag 134  Q
    |||||||| |||||||| ||||||| || ||||||| |||||| || ||||||| |||||||||||||||  ||||||| || |||||||||||||||||    
T  40090854 aatgaatattttatattttaatacacccacgtagtcgaaacggaagtttgacgaatgttgagactatctc--tgaaatcatccaataattgcagcggaag 40090951  T
Q  135 accattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatt 234  Q
      | ||||||||||| ||| ||||||||| || | |||||||||||| |||| |||||||||| |||||||| |||||||||||||||| |||||  |||    
T  40090952 gtccttggtgaaaatgtcagctatttgatagcaaaatggaacatgtagaacacgtacttgacctttagcaactttttcacgcacaaaatagatatttatt 40091051  T
Q  235 tcaacgtg-ttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggctttgatgatc 327  Q
    | || ||| |||||||| || ||||||||||||||||| | ||| |||||||| |||||  ||||||||||||||||  ||| |||||||||||    
T  40091052 ttaatgtgtttttgtgcattgatgttggataggattacctcacaagtaaacaacactaaggttgtcacaatagacaaaagtgactttgatgatc 40091145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 308
Target Start/End: Complemental strand, 16818632 - 16818357
Alignment:
Q  31 atacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcg 130  Q
    |||||||||||| || ||||||||||| |||| | ||||| |||| |||| || |  | |||||| ||||||| |  |||||| |||||||| || ||||    
T  16818632 atacaatgaatatttcatattctaataaatccgcatagtcgaaactggagattaattaatgttgatactatcttt--gaaatcatcaaataactgtagcg 16818535  T
Q  131 gaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatc 230  Q
    ||||  | ||||| ||||| ||| || |||| |  || || |||||||| | ||||  ||||||| | | ||||||||||| ||||||||| || ||||     
T  16818534 gaaggtccttggtaaaaatgtcaactttttggtaacgtgaaggaacatgcagaacacatacttgaacttgagcaacctttttacgcacaaagtgaatatt 16818435  T
Q  231 catttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagac 308  Q
    ||| |||| |||||| |||| ||  ||||| ||| |||||| ||| |  ||||||| || ||||||||||||||||||    
T  16818434 catctcaatgtgtttcgtgcattagtgttgaatatgattacctgataattaaacaacaccaacattgtcacaatagac 16818357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 7725581 - 7725539
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  7725581 aatatactaataatttatacaatgaatattttatattctaata 7725539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 38378262 - 38378220
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  38378262 aatatactaataatttatacaatgaatattttatattctaata 38378220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 32447945 - 32447621
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||  ||||||||||||||||  ||||||     
T  32447945 aatatattaataatctatacaatgaatattttatattctaatactcccccgtagtcgaaacgggaggttgacggatgttgagactatctct--gaaatca 32447848  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    |||||||||||||| ||||| || ||||||||||| ||| ||||||||| ||||||||  ||||||| ||||  ||||||||| |||||||||||||| |    
T  32447847 tcaaataattgcagtggaaggcccttggtgaaaatctcaactatttgatagcgagatgagacatgtagaacacatacttgacctttagcaaccttttcgc 32447748  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 314  Q
    ||||||||||||||||||||||||  ||||||||| ||| |||||||||||||||||  |||| |||||||| |||||| || ||||| |||||||| ||    
T  32447747 gcacaaaatggatatccatttcaatatgttttgtgtgttgatgttggataggattacccgacaagtaaacaacactaacgttatcacagtagacaagagt 32447648  T
Q  315 ggctttgatgatcaagcactggagttc 341  Q
    ||||||||||||||  |||||||||||    
T  32447647 ggctttgatgatcagacactggagttc 32447621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 55157669 - 55157360
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||| ||| ||| ||||||||||||| |||||||||||||||  |||||||||| |||| |||||||||||  ||||||||||||||||  ||||||     
T  55157669 aatatattaacaatttatacaatgaatattttatattctaatacgcccccgtagtcgaaacaggaggttgacggatgttgagactatctct--gaaatca 55157572  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    ||||||||||||||||||||||| ||||| ||||| ||| ||||||||  ||||||||  ||||||| |||| |||||||||| ||||||||||||||||    
T  55157571 tcaaataattgcagcggaagacccttggtaaaaatgtcagctatttgaa-gcgagatgagacatgtagaacacgtacttgacctttagcaaccttttcac 55157473  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 314  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||| ||    
T  55157472 gcacaaaatggatatccatttcaatatgttttgtgcgttgatgttggataggattacctgacaagtaaacaacactaacattgtcacagtagacaagagt 55157373  T
Q  315 ggctttgatgatc 327  Q
    | |||||||||||    
T  55157372 gactttgatgatc 55157360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 48007280 - 48007590
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||   |||||||||| ||||||||||||||||  |||||||||||||| |  ||||||     
T  48007280 aatatattaataatttatacaatgaatattttatattctaatatgcccccgtagtcgaaacgggaggttgacggatgttgagactatcttt--gaaatca 48007377  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    |||||||||||||||||||| || ||||| ||||| ||| ||||||||| ||||||||  ||||||| |||| |||||||||  ||||||||||||||||    
T  48007378 tcaaataattgcagcggaaggcccttggtaaaaatgtcaactatttgatagcgagatgagacatgtagaacacgtacttgacttttagcaaccttttcac 48007477  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 314  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||| |||||| ||||| |||||| | |||||| ||||||||||||||||| ||    
T  48007478 gcacaaaatggatatccatttcaatatgttttgtgcgttgatgttggatatgattacctgacaagtaaacgacactaacgttgtcacaatagacaagagt 48007577  T
Q  315 ggctttgatgatc 327  Q
    |||||||||||||    
T  48007578 ggctttgatgatc 48007590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 8179905 - 8180204
Alignment:
Q  22 taataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaata 121  Q
    ||||||| ||||||||||||| |||||||||||||||   | ||||||||||||||||||||||||  |||||||||||||||  ||||||| |||||||    
T  8179905 taataatttatacaatgaatattttatattctaatacgctctcgtagtcaaaacgggaggttgacggatgttgagactatctc--tgaaatcatcaaata 8180002  T
Q  122 attgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaa 221  Q
    ||||||| ||||| || ||||||||||| ||| ||||||||| || |||||  ||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  8180003 attgcagtggaaggcccttggtgaaaatgtcacctatttgatagcaagatgagacatgtagaacacgtacttgacctttagcaactttttcacgcacaaa 8180102  T
Q  222 atggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggctttg 321  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||| |||||||| |||||  ||||||||||||| ||| |||||||||    
T  8180103 atggatatccatttcaatatgttttgtgcgttgatgttggataggattacctgacaagtaaacaacactaatgttgtcacaatagataagagtggctttg 8180202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 8346306 - 8345954
Alignment:
Q  17 tatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtc 116  Q
    |||||||||||| ||||||||||||| |||||||| |||||   ||| |||||| |||||||| |||||||| |||||||||||| |||  |||||| ||    
T  8346306 tatactaataatttatacaatgaatattttatattttaatatgcccctgtagtcgaaacgggatgttgacgaatgttgagactatatct--gaaatcatc 8346209  T
Q  117 aaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgc 216  Q
    | ||||||| || ||||| || ||||||||||| ||| ||||||||| || | |||| ||||| | ||||  | ||||||| ||||||||||||||||||    
T  8346208 agataattgtagtggaaggcccttggtgaaaatgtcagctatttgatagctatatgggacatgcataacacattcttgacctttagcaaccttttcacgc 8346109  T
Q  217 acaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtgg 316  Q
    |||||| |||||||||||||||  |||||||||| || ||||| ||||||||||||||||| |||||||| |||||  |||||||| |||||| | ||||    
T  8346108 acaaaagggatatccatttcaatttgttttgtgctttgatgtttgataggattacttgacaagtaaacaacactaatgttgtcacagtagacatgagtgg 8346009  T
Q  317 ctttgatgatcaagcactggagttccgacagtaggttttgaagccaacaatattc 371  Q
    ||||||||||||  || || |||||  |||||| ||||  |||||||||| ||||    
T  8346008 ctttgatgatcagacattgtagttctaacagtaagtttcaaagccaacaagattc 8345954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 327
Target Start/End: Complemental strand, 46882983 - 46882801
Alignment:
Q  143 tgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtg 242  Q
    ||||||| ||| ||||||||||||||||||  || |||| ||||| |||  || | |||| |||||||||||  |||||||| |||| |||||||| |||    
T  46882983 tgaaaatgtcagctatttgattgcgagatgagacttgtagaacatatacaggatctttagtaaccttttcac--acaaaatgaatattcatttcaatgtg 46882886  T
Q  243 ttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggctttgatgatc 327  Q
    ||||||||||| | ||| ||||||||||| ||||| |||||||| ||||||||||||| | ||||||||   | |||||||||||    
T  46882885 ttttgtgcgttgacgttagataggattacctgacaagtaaacaacactaacattgtcatagtagacaagaacgactttgatgatc 46882801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 262
Target Start/End: Complemental strand, 3955535 - 3955324
Alignment:
Q  49 attctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaaa 148  Q
    ||||||||||| |||||||||  ||||||||||||||||| |||||||||||  || |  ||||| ||||| | ||||| |||||| || |||||||| |    
T  3955535 attctaatacacccccgtagttgaaacgggaggttgacgaatgttgagacta--tcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaaga 3955438  T
Q  149 tttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttgt 248  Q
    | ||| | ||||| |  || || || |||||||| ||  ||||||| |||   || || || |||||||||||||| |||||||| || | |||||| ||    
T  3955437 tgtcagcgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggcgactttctcacgcacaaaatgtatatccatctcgatgtgtttggt 3955338  T
Q  249 gcgtttatgttgga 262  Q
    ||||| ||||||||    
T  3955337 gcgttgatgttgga 3955324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 47249327 - 47249538
Alignment:
Q  49 attctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaaa 148  Q
    ||||||||||| |||||||||| |||||||||| |||||| |||||||||||  || |  ||||| ||||| | ||||| |||||| || |||||||| |    
T  47249327 attctaatacacccccgtagtcgaaacgggaggctgacgaatgttgagacta--tcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaaga 47249424  T
Q  149 tttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttgt 248  Q
    | ||| | ||||| |  || || || |||||||| ||  ||||||| |||   |  || || |||||||||||||| |||||||| || | |||||| ||    
T  47249425 tgtcagcgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggtgactttctcacgcacaaaatgtatatccatctcgatgtgtttggt 47249524  T
Q  249 gcgtttatgttgga 262  Q
    ||||| ||||||||    
T  47249525 gcgttgatgttgga 47249538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 13557490 - 13557448
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  13557490 aatatactaataatttacacaatgaatattttatattctaata 13557448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 24972264 - 24972300
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaata 57  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  24972264 ctaataatttatacaatgaatattttatattctaata 24972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 52053853 - 52054163
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||  |||||||||||||||  |||||||     
T  52053853 aatatattaataatttatacaatgaatattttatattctaatacgcccccgtagtcgaaacgggaggttgacggatgttgagactatctc--tgaaatca 52053950  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    |||||||||||||||||||| || ||||| ||||| ||| ||||||||| ||||||||  ||||||| |||| |||||||||| ||||||||||||||||    
T  52053951 tcaaataattgcagcggaaggcccttggtaaaaatgtcaactatttgatagcgagatgagacatgtagaacacgtacttgacctttagcaaccttttcac 52054050  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggt 314  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||| ||||| || ||||  |||||| |||||||| |||||||  ||    
T  52054051 gcacaaaatggatatccatttcaatatgttttgtgcgttgatgttgaataggattacctgacaagtcaacagcactaacgttgtcacagtagacaatagt 52054150  T
Q  315 ggctttgatgatc 327  Q
    |||||||||||||    
T  52054151 ggctttgatgatc 52054163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 320
Target Start/End: Complemental strand, 30332667 - 30332387
Alignment:
Q  38 gaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagacc 137  Q
    ||||| || ||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||||   ||| || ||||| |  ||||||||||||||    
T  30332667 gaatatttcatattctaatacacccccgtagtcgaaactggaggttgacgaatgttgagactatctcg--gaagtcatcaaacagctgcagcggaagacc 30332570  T
Q  138 attggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttca 237  Q
     || || ||||| ||| |||| || | ||| || |||||||| |  || || ||||||||   |||||||||||| ||||||||||| |||||||| |||    
T  30332569 cttagtaaaaatgtcagctatctggtagcgtgacggaacatgcattacgtgaacttgaccgcgagcaaccttttctcgcacaaaatgaatatccatctca 30332470  T
Q  238 acgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggcttt 320  Q
    | |||||||||| |||  |||||||| ||||||| ||| |  || |||  ||||||||| |||||||| || || ||||||||    
T  30332469 atgtgttttgtgtgttggtgttggatgggattacctgataaatagacagcactaacattatcacaatataccagagtggcttt 30332387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 18459581 - 18459721
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaat 120  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||  ||||||||||| |||||     
T  18459581 ctaataatttatacaatgaatattttatattctaatacacccccgtagtcaaaaccggaggttgtcgaatgttgagacta--tctctgaaatcatcaaac 18459678  T
Q  121 aattgcagcggaagaccattggtgaaaatttcatctatttgat 163  Q
    |  |||||||||||  | ||||| || || ||| |||||||||    
T  18459679 agctgcagcggaaggaccttggtaaatatgtcagctatttgat 18459721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 25623675 - 25623886
Alignment:
Q  49 attctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaaa 148  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||||||  ||||  ||||| ||||| | ||||| |||||| || |||||||| |    
T  25623675 attctaatacacccccgtagtcgaaacgggaggttgacgaatgttgagacta--tctcgaaaatcatcaaagagttgcaacggaagtcctttggtgaaga 25623772  T
Q  149 tttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttgt 248  Q
    | ||| | ||||| |  || || || |||||||| ||  ||||||| |||   || || || |||||||||||||| |||| ||| || | |||||| ||    
T  25623773 tgtcagcgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggcgactttctcacgcacaaaatgtatattcatctcgatgtgtttggt 25623872  T
Q  249 gcgtttatgttgga 262  Q
    ||||| ||||||||    
T  25623873 gcgttgatgttgga 25623886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 18459738 - 18459780
Alignment:
Q  16 atatactaataatctatacaatgaatactttatattctaatac 58  Q
    |||| |||||||| ||||||||||||| |||||||||||||||    
T  18459738 atattctaataatttatacaatgaatattttatattctaatac 18459780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 49915912 - 49915875
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaatac 58  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  49915912 ctaataatttatacaatgaatattttatattctaatac 49915875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 10544164 - 10544200
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaata 57  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  10544164 ctaataatttatacaatgaatattttatattctaata 10544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 17414779 - 17414743
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaata 57  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  17414779 ctaataatttatacaatgaatattttatattctaata 17414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 17415350 - 17415386
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaata 57  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  17415350 ctaataatttatacaatgaatattttatattctaata 17415386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 22200646 - 22200291
Alignment:
Q  18 atactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtca 117  Q
    |||||||| || ||||||||||||| ||||||||||||||| |||  |||||| | ||||||||||||||| |||||||||||||| |   ||||| |||    
T  22200646 atactaatgatttatacaatgaatattttatattctaatacgtccttgtagtcgagacgggaggttgacgaatgttgagactatcttta--aaatcatca 22200549  T
Q  118 aataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtac----ttgaccattagcaaccttttca 213  Q
    || |||||||| ||||| || ||||||||||| ||| |||| |||| ||||||||| ||||||| |||| ||||    |||||| ||| |||||||| ||    
T  22200548 aacaattgcagtggaaggcccttggtgaaaatgtcaactatctgatagcgagatggtacatgtagaacacgtacgtacttgacctttaacaacctttcca 22200449  T
Q  214 cgcacaaaatggatatccatttcaacgtgttttgtgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaaggg 313  Q
    |||| |||||||||||||||||||| |||||||||||||| || |||||||||||||  ||||| |||||||| |||||| |||||||| |||||||| |    
T  22200448 cgcataaaatggatatccatttcaatgtgttttgtgcgttgatattggataggattatctgacaagtaaacaacactaacgttgtcacagtagacaagag 22200349  T
Q  314 tggctttgatgatcaagcactggagttccgacagtaggttttgaagccaacaatattc 371  Q
    || |||||||||||   || ||||||||  |||||| |||| ||||||||||| ||||    
T  22200348 tgactttgatgatcggacattggagttctaacagtaagtttggaagccaacaagattc 22200291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 840851 - 841164
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||| ||||||| || ||| |||||| ||| |||||||||||   ||||||||| |||||||||||||| || | |||||||||||| |  ||||||     
T  840851 aatatattaataatttacacagtgaatattttttattctaatacgcacccgtagtcgaaacgggaggttgatgaatattgagactatcttt--gaaatca 840948  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcac 214  Q
    |||||||||  | | |||||  | ||||||||||| ||||||||||||| || |||||| ||||||| |||| |||||||||| ||||||||||||||||    
T  840949 tcaaataatcacggtggaaggtctttggtgaaaatatcatctatttgatagcaagatgggacatgtagaacacgtacttgacctttagcaaccttttcac 841048  T
Q  215 gcacaaaatggatatccatttcaacgtgttttgt-----gcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagaca 309  Q
     |||||||||||||||| |||||| |||||||||     | ||| ||||||||||||||||| || ||  ||||||| |||||| |||||||||||||||    
T  841049 acacaaaatggatatccgtttcaatgtgttttgttttgagtgttgatgttggataggattacatggcaaataaacaacactaacgttgtcacaatagaca 841148  T
Q  310 agggtggctttgatga 325  Q
    || |||||||||||||    
T  841149 agagtggctttgatga 841164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 10533237 - 10533448
Alignment:
Q  49 attctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaaa 148  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||||||  || |  ||||| ||||| | ||||| |||||| || |||||||| |    
T  10533237 attctaatacacccccgtagtcgaaacgggaggttgacgaatgttgagacta--tcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaaga 10533334  T
Q  149 tttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttgt 248  Q
    | ||| | ||||| |  || || || |||||||| ||   |||||| |||   || || || |||||||||||||| |||||||| || | |||||| ||    
T  10533335 tgtcagcgatttggtaacgtgaagggacatgtaagactcatacttggccacgggcgactttctcacgcacaaaatgtatatccatctcgatgtgtttggt 10533434  T
Q  249 gcgtttatgttgga 262  Q
    ||||| ||||||||    
T  10533435 gcgttgatgttgga 10533448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 931653 - 931611
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||    
T  931653 aatataataataatttatgcaatgaatactttatattctaata 931611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 48 - 320
Target Start/End: Original strand, 33362232 - 33362502
Alignment:
Q  48 tattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaa 147  Q
    |||||||||||| |||||||||| |||| ||||| |||||| |||||||||||||||   ||| || ||||| |  |||||||||||||| || || |||    
T  33362232 tattctaatacacccccgtagtcgaaactggaggctgacgaatgttgagactatctcg--gaagtcatcaaacagctgcagcggaagacccttagtaaaa 33362329  T
Q  148 atttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttg 247  Q
    || ||| |||| || | ||| || |||||||| |  ||  | ||||||||   |||||||||||| ||||||||||| |||||||| |||| ||||||||    
T  33362330 atgtcagctatctggtagcgtgacggaacatgcattacgcgaacttgaccgcgagcaaccttttctcgcacaaaatgaatatccatctcaatgtgttttg 33362429  T
Q  248 tgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggcttt 320  Q
    ||||||  |||||||| ||||||| ||| |  || |||  ||||||||| || ||||| || || ||||||||    
T  33362430 tgcgttggtgttggatgggattacctgataaatagacagcactaacattatcgcaatataccagagtggcttt 33362502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 12309940 - 12310182
Alignment:
Q  21 ctaataatctatacaa--tgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaa 118  Q
    |||||||| |||||||  |||| | ||||||||||||||||  ||||||| | |||| |||||||  ||| ||||||||||||||||  |||||| ||||    
T  12309940 ctaataatttatacaaaatgaacattttatattctaatacactcccgtagacgaaactggaggttctcgaatgttgagactatctct--gaaatcatcaa 12310037  T
Q  119 ataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcac 218  Q
    | || ||||||||||| || ||||| || || |||  ||||||||  || || | |||||| || ||  |||||||||| ||||||||||| |||| |||    
T  12310038 acaactgcagcggaaggcccttggtaaatatgtcagatatttgataacgggacgaaacatgaaagacccgtacttgacctttagcaaccttgtcacacac 12310137  T
Q  219 aaaatggatatccatttcaacgtgttttgtgcgtttatgttggat 263  Q
     || || || ||||||||||  |||||||||| ||||||||||||    
T  12310138 gaagtgaatttccatttcaatatgttttgtgcatttatgttggat 12310182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 17945287 - 17945368
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgaga 97  Q
    ||||||| |||||| ||||||||||||| |||||||||||||| | ||||  |||  ||||||||||||||| | ||||||||    
T  17945287 aatatacaaataatttatacaatgaatattttatattctaatata-ccccagagttgaaacgggaggttgacaaatgttgaga 17945368  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 12309899 - 12309935
Alignment:
Q  21 ctaataatctatacaatgaatactttatattctaata 57  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  12309899 ctaataatttatacaatgaataatttatattctaata 12309935  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 320
Target Start/End: Original strand, 32307004 - 32307274
Alignment:
Q  48 tattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaa 147  Q
    |||||||||||| |||||||||| |||| ||||| |||||| ||| |||||||||||   ||| || ||||| |  |||||||||||||| || || |||    
T  32307004 tattctaatacacccccgtagtcgaaactggaggctgacgaatgtggagactatctcg--gaagtcatcaaacagctgcagcggaagacccttagtaaaa 32307101  T
Q  148 atttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttg 247  Q
    || ||| |||| || |  || || |||||||| |  ||  | ||||||||   |||||||||||| ||||||||||| |||||||| |||| ||||||||    
T  32307102 atgtcagctatctggtaacgtgacggaacatgcattacgcgaacttgaccgcgagcaaccttttctcgcacaaaatgaatatccatctcaatgtgttttg 32307201  T
Q  248 tgcgtttatgttggataggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggcttt 320  Q
    ||||||  |||||||| ||||||| ||| |  || |||  ||||||||| || ||||| || || ||||||||    
T  32307202 tgcgttggtgttggatgggattacctgataaatagacagcactaacattatcgcaatacaccagagtggcttt 32307274  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 12755366 - 12755490
Alignment:
Q  20 actaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaa 119  Q
    ||||||||| | ||||||| ||| |||||||||||||||  || | ||||| ||||||||||||||||| |||| | ||||  ||||||||||| |||||    
T  12755366 actaataatttgtacaatggatattttatattctaatacccccacttagtcgaaacgggaggttgacgaatgttaaaacta--tctctgaaatcatcaaa 12755463  T
Q  120 taattgcagcggaagaccattggtgaaa 147  Q
    |||||| |||||| |||| |||||||||    
T  12755464 taattgtagcggatgacc-ttggtgaaa 12755490  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 8051921 - 8051963
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||    
T  8051921 aatatattaataatttatacaatgaatattttatattctaata 8051963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 7231634 - 7231766
Alignment:
Q  128 gcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggat 227  Q
    |||||||||| |||||||| || ||  | ||||||| ||||||||||||||| | ||||   ||||| |||   ||||| |||||||| ||||| || ||    
T  7231634 gcggaagacctttggtgaagatgtcggcaatttgatagcgagatggaacatgaagaacacagacttgtccacgggcaactttttcacgaacaaagtgaat 7231733  T
Q  228 atccatttcaacgtgttttgtgcgtttatgttg 260  Q
     || ||||||| ||| || ||||||| ||||||    
T  7231734 gtctatttcaatgtgcttagtgcgttgatgttg 7231766  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 21995283 - 21995461
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcg 114  Q
    |||||||||||||  |||| |||||||| | ||||||||||||   || ||||||| ||| ||||||||||| | |||||| ||||||||  |||||||     
T  21995283 aatatactaataacttatataatgaatattgtatattctaatatgccctcgtagtcgaaatgggaggttgacaaatgttgaaactatctc--tgaaatca 21995380  T
Q  115 tcaaataattgcagcggaagaccattggtgaaaatttcatctatttgattgcgagatggaacatgtaaaacatgtacttga 195  Q
     ||||||||||||||||||| |  |||| |||||| |||  |||||||| ||||||||| ||||||| ||||  |||||||    
T  21995381 acaaataattgcagcggaaggctcttggcgaaaatgtcagatatttgatagcgagatgggacatgtagaacacatacttga 21995461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 13298819 - 13298776
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaatac 58  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  13298819 aatatactaataatttatacaatgaatattttatattctaatac 13298776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 21998884 - 21998955
Alignment:
Q  264 aggattacttgacatgtaaacaatactaacattgtcacaatagacaagggtggctttgatgatcaagcactg 335  Q
    |||||||| ||||| |||||||| |||||||| ||||||||||||||   ||||| |||||||||| |||||    
T  21998884 aggattacctgacaagtaaacaacactaacatcgtcacaatagacaaaactggctatgatgatcaaacactg 21998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 4125523 - 4125481
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||    
T  4125523 aatatattaataatttatacaatgaatattttatattctaata 4125481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9691113 - 9691071
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  9691113 aatatactaataatttacacaatgaatattttatattctaata 9691071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 24507852 - 24507894
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||    
T  24507852 aataaactaataatttatacaatgaatattttatattctaata 24507894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 262
Target Start/End: Complemental strand, 92151 - 91940
Alignment:
Q  49 attctaatacatccccgtagtcaaaacgggaggttgacgagtgttgagactatctctctgaaatcgtcaaataattgcagcggaagaccattggtgaaaa 148  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||||||  || |  ||||| ||||| | ||||| |||||| || |||||||| |    
T  92151 attctaatacacccccgtagtcgaaacgggaggttgacgaatgttgagacta--tcacaaaaatcatcaaagagttgcaacggaagtcctttggtgaaga 92054  T
Q  149 tttcatctatttgattgcgagatggaacatgtaaaacatgtacttgaccattagcaaccttttcacgcacaaaatggatatccatttcaacgtgttttgt 248  Q
    | ||| | ||||| |  || || || |||||||| ||   |||||| |||   || || || |||||||||||||| |||| ||| || | |||||| ||    
T  92053 tgtcagcgatttggtaacgtgaagggacatgtaagactcatacttggccacgggcgactttctcacgcacaaaatgtatatacatctcgatgtgtttggt 91954  T
Q  249 gcgtttatgttgga 262  Q
    ||||| ||||||||    
T  91953 gcgttgatgttgga 91940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 2095 - 2137
Alignment:
Q  15 aatatactaataatctatacaatgaatactttatattctaata 57  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||    
T  2095 aatatattaataatttatacaatgaatattttatattctaata 2137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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