View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_13 (Length: 343)
Name: NF2563_high_13
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 53873933 - 53873606
Alignment:
| Q |
1 |
ttgaagctttagaaataataatttggaaatagaagcttctggggtgtagtatctggtgttattcttatcattatcattatcattgtctatctatttttta |
100 |
Q |
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| T |
53873933 |
ttgaagctttagaaataaaaatttggaaatagaagcttctggggtgtagtatctggtgttattcttatcattatcatt------gtctatctatttttta |
53873840 |
T |
|
| Q |
101 |
aggcaaactaaaaatgaatagatttgtaagttttaggaattagaatttatgcagatc--------aatttcaatcagtagtggatagtattcatcattga |
192 |
Q |
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| T |
53873839 |
aggcaaactaaaaatgaatagatttgtaagttttaggaattagaatttatgcaactttgccctggaattaaaatgattgaaaaacagtattcatcattga |
53873740 |
T |
|
| Q |
193 |
catacctgaacaacagttgttctgagacaatgattcatttcaatcaagaaatcaatgaaaattgcagatcaatttgagaaaattagcagggttgctttag |
292 |
Q |
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| T |
53873739 |
catacctgaacaacagttgttctgagacaatgattcatttcaatcaagaaatcaatgaaaattgcagatcaatttgagaaaattagcagggttgctttag |
53873640 |
T |
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| Q |
293 |
gaattccagcgtctgttactttttggatgttata |
326 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
53873639 |
gaattccagcgtctgttactttttggatgttata |
53873606 |
T |
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