View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_14 (Length: 340)
Name: NF2563_high_14
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 46284066 - 46283745
Alignment:
| Q |
19 |
agaaacacaaaaaatttcagctttcacagatcttttcataagatacatagacacaaacatcaaggtcaaacatatttcttactagtcaaaatctagtcca |
118 |
Q |
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| T |
46284066 |
agaaacacaaaaaatttcagctttcacagatcttttcataagatacatagacacaaacatcaaagtcaaacatatttcttactagtcaaaatctagtcca |
46283967 |
T |
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| Q |
119 |
aacatgtcaattgacctaaaattttcaatgtaataaacatatcacaaattaaaggaagcatataggtactagtaatttaatatatcttcataaatcagaa |
218 |
Q |
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| T |
46283966 |
aacatgtcaattgacctaaaattttcaatgtaataaacatatcacaaattaaaggaagcatataggtactagtaatttaatataacttcataaatcagaa |
46283867 |
T |
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| Q |
219 |
aaattaaattatgacattacagataatagtataacattcataactcaacatgaacgagtaattttaaaccaaaacaagatcagattaacacaaacctgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283866 |
aaattaaattatgacattacagataatagtataacattcataactcaacatgaacgagtaattttaaaccaaaacaagatcagattaacacaaacctgtt |
46283767 |
T |
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| Q |
319 |
tggccatgtcacaagctttgtc |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
46283766 |
tggccatgtcacaagctttgtc |
46283745 |
T |
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