View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_15 (Length: 339)
Name: NF2563_high_15
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 193 - 332
Target Start/End: Complemental strand, 45768665 - 45768526
Alignment:
| Q |
193 |
ccttgttcatttttgccaagaccctttcctttccaacccattttttgaagaagcttaaaaccaatattagaagaagttatgtgtgtgtcaagagaagctt |
292 |
Q |
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| T |
45768665 |
ccttgttcatttttgccaagaccctttcctttccaacccattttttgaagaagtttaaaaccaatattagaagaagttatgtgtgtgtcaagagaagctt |
45768566 |
T |
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| Q |
293 |
gttcaacattatccagatcaacgttttcagttggcctttg |
332 |
Q |
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| T |
45768565 |
gttcaacattatccagatcaacgttttcagttggcctttg |
45768526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 45768776 - 45768733
Alignment:
| Q |
82 |
aagccttattagataatctttatttcattatacacatggattag |
125 |
Q |
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| T |
45768776 |
aagccttattagataatcttaatttcattatacacatggattag |
45768733 |
T |
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