View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2563_high_16 (Length: 323)
Name: NF2563_high_16
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 42225999 - 42226295
Alignment:
| Q |
9 |
gaagaaaatatataaaattaaaatgaagctagagctagctatacgaaatgaataggttgatcatatgcatgacatgtattgtattgctaatgctggttgg |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42225999 |
gaagaatatatataaa-ttaaaatgaagctagagctagctatacgaaatgaataggttgatcatatgcatgacatgtattgtattgctaatgctggttgg |
42226097 |
T |
|
| Q |
109 |
ttcatacatctgtgaatatagtgcttcttaaatagtgcaaattctgctacctcatttaaattgtcactctcttagtgatcagatgctgagaccctactca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42226098 |
ttcatacatctgtgaatatagtgcttcttaaatagtgcaaattctactacctcatttaaattgtcactctcttagtgatcagatgctgagaccctactca |
42226197 |
T |
|
| Q |
209 |
ccaagcttttacagtcatttgaaagcgactaaattcctcattgttttccattgacaaaaataaaacaaacaataattaatgttatgctgtttagtaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42226198 |
ccaagcttttacagtcatttgaaagcgactaaattcctcattgttttccattgacaaaaataaaacaaacaataattaatgttatgctgtttagtaat |
42226295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University