View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_17 (Length: 317)
Name: NF2563_high_17
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 51418633 - 51418920
Alignment:
| Q |
12 |
atgaagggaggcgcgtgaagatgacgaaaagggagacggttgaggaggtgtttgaggtggaccaagcggcagaggagttcatagagaggttttacagaga |
111 |
Q |
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| T |
51418633 |
atgaagggaggcgcgtgaagatgacgaaaagggagacggttgaggaggtgtttgaggtggatcaagcggcagaggagttcatagagaggttttacagaga |
51418732 |
T |
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| Q |
112 |
gttgaggttgcagaaatggttggatcatcattatcactattaatggtgatgtgtcacatgttgtgttgtgtttgacccagcaggtaaaacatcatgtgca |
211 |
Q |
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| T |
51418733 |
gttgaggttgcagaaatggttggatcatcattatcactattaatggtgatgtgtcacatgttgtgttgtgtttgacccagtaggtaaaacatcatgtgca |
51418832 |
T |
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| Q |
212 |
tgcatgtggcaggtgaatcatattgaagctcaaataacaaacaaacaactctatttctgcagctcctg---atgttgttgattacctt |
296 |
Q |
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| T |
51418833 |
tgcatgtggcaggtgaatcatattgaagctcaaataacaaacaaacaactctatttctgcagctcctgttaatgttgttgattacctt |
51418920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 51413645 - 51413716
Alignment:
| Q |
71 |
gaccaagcggcagaggagttcatagagaggttttacagagagttgaggttgcagaaatggttggatcatcat |
142 |
Q |
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| T |
51413645 |
gaccaggcggcggaagagttcatagaaaagttttacagagaattgaggttgcagaaatggttggatcatcat |
51413716 |
T |
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