View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_3 (Length: 479)
Name: NF2563_high_3
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 46236409 - 46236108
Alignment:
| Q |
15 |
attattttcattaaatctgataaacgtgaactataatcctcgaaaccactacatataacaatttccacccctcctggaattagatcaatcttgacacact |
114 |
Q |
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| T |
46236409 |
attattttcattaaatctgataaacgtgaactataatcctcgagaccactacatataacaatttccacccctcctggaattagatcaatcttgacacact |
46236310 |
T |
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| Q |
115 |
tcactacacttgaaggatctgctgataattcatttccagtttcaaccctacttgaactaaccatttctttcatcttatctctctttatttcaagttcatt |
214 |
Q |
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| T |
46236309 |
tcactacacttgaaggatctgctgataattcatttccagtttcaaccctacttgaactaaccatttctttcattttatctctctttatttcaagttcatt |
46236210 |
T |
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| Q |
215 |
aattttctgcttcaaaatttgtacataatttgcagcctcacctatgtgatctgatactgaacgcttaccctaaaagcaaagaaagatgttgtgaaaacta |
314 |
Q |
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| T |
46236209 |
aattttctgcttcaaaatttgtacataatttgcagcctcacctatgtgatctgatactgaacgcttaccctaaaagcaaagaaagatgttgtgaaaacta |
46236110 |
T |
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| Q |
315 |
cg |
316 |
Q |
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|| |
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| T |
46236109 |
cg |
46236108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 46236027 - 46235953
Alignment:
| Q |
398 |
gaccttgatgagatcaaaaggaattgaagaacggagtgatgaacatagaatagacatttgcatcctcctttgctt |
472 |
Q |
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| T |
46236027 |
gaccttgatgagatcaaaaggaagtgaagaacggagtgatgaacatagaatagacatttgcatcctcctttgctt |
46235953 |
T |
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