View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_6 (Length: 461)
Name: NF2563_high_6
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 176 - 453
Target Start/End: Original strand, 43233167 - 43233443
Alignment:
| Q |
176 |
tgttggagaaaacaatgattcaaatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttcaaattaaatttgggatgcaagtttgttta |
275 |
Q |
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| T |
43233167 |
tgttggagaaaacaatgattcaaatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttcaaa----atttcggatgcaagtttgttta |
43233262 |
T |
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| Q |
276 |
ggtgtccaatatcagc---aatacatagaggattaccaattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccc |
372 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43233263 |
ggtgtccaatatcagcagcaatacatagaggattaccaattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccc |
43233362 |
T |
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| Q |
373 |
tgcaagttattttacctacaaccatttcaaattcattttaggttgacttgaagtctacggtataagtttatttttcttctc |
453 |
Q |
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| T |
43233363 |
tgcaagttattttacctacaaccatttcaaattcattttaggttgacttgaagtctacggtataagtttatttttcttctc |
43233443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 43233060 - 43233103
Alignment:
| Q |
69 |
agtttttcatattcttgagcttgaatctcattgttaaattactc |
112 |
Q |
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| T |
43233060 |
agtttttcatattcttgagcttgaatctcattgttaaattactc |
43233103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 31982589 - 31982640
Alignment:
| Q |
195 |
tcaaatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttc |
246 |
Q |
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| T |
31982589 |
tcaaatagagtaacgtataaagagtgggaaaagtaggcagtgtcaccctttc |
31982640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 31982922 - 31982982
Alignment:
| Q |
319 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagt |
379 |
Q |
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| T |
31982922 |
tactcatacgttttgaatctaatgtttttctttcaattgtaactttgtcacacctgcaagt |
31982982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 43232381 - 43232410
Alignment:
| Q |
18 |
tttttccttcttaaagctgcagtcttataa |
47 |
Q |
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| T |
43232381 |
tttttccttcttaaagctgcagtcttataa |
43232410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 453
Target Start/End: Original strand, 8024261 - 8024395
Alignment:
| Q |
319 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
418 |
Q |
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| T |
8024261 |
tactcatacgttttgaatctaatgtttttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
8024360 |
T |
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| Q |
419 |
cttgaagtctacggtataagtttatttttcttctc |
453 |
Q |
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| T |
8024361 |
cttgaagtctatgctacaagtttatttttcttctc |
8024395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 8023544 - 8023595
Alignment:
| Q |
195 |
tcaaatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttc |
246 |
Q |
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|||||||||| || |||||| ||||||||||||| ||||||||||||||||| |
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| T |
8023544 |
tcaaatagagtaacgtataaagagtgggaaaagtaggcagtgtcaccctttc |
8023595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 319 - 453
Target Start/End: Original strand, 18647484 - 18647618
Alignment:
| Q |
319 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
418 |
Q |
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|||||||| |||| |||| |||| ||||||||||| |||| |||||| | |||||||||| |||||||||||||| ||| ||||||||| ||||||| |
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| T |
18647484 |
tactcatacgttttgaatctaatgattttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
18647583 |
T |
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| Q |
419 |
cttgaagtctacggtataagtttatttttcttctc |
453 |
Q |
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| T |
18647584 |
cttgaagtctatgctacaagtttatttttcttctc |
18647618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 18646770 - 18646821
Alignment:
| Q |
195 |
tcaaatagagcaaagtataaggagtgggaaaagttggcagtgtcaccctttc |
246 |
Q |
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|||||||||| || |||||| ||||||||||||| ||||||||||||||||| |
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| T |
18646770 |
tcaaatagagtaacgtataaagagtgggaaaagtaggcagtgtcaccctttc |
18646821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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