View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_high_8 (Length: 410)
Name: NF2563_high_8
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 111 - 357
Target Start/End: Complemental strand, 2817507 - 2817261
Alignment:
| Q |
111 |
agaaagagaagaaagtatcacaaacaaaggagnnnnnnncattttcataaaccaagaacatgcattctggcttaattggcttgtttgccacaaaccacac |
210 |
Q |
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| T |
2817507 |
agaaagagaagaaagtatcacaaacaaaggagtttttttcattttcataaaacaagaacatgcattctggcttaattggcttgtttgccacaaaccacac |
2817408 |
T |
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| Q |
211 |
gtaattagacatgtctaaggtccattccaaatttactaaaacactgagtatgcttttactttttccatcaattcggataataaaatccgaataattaggt |
310 |
Q |
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| T |
2817407 |
gtaattagacatgtctaaggtccattccaaatttactaaaacactgagtatgcttttactttttccatcaattcggataataaaatccgaataattaggt |
2817308 |
T |
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| Q |
311 |
agttcaaagtttataatccgaacacagcaaatagcagagccaggtcc |
357 |
Q |
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| T |
2817307 |
agttcaaagtttataatccaaacacagcaaatagctgagccaggtcc |
2817261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 2817575 - 2817511
Alignment:
| Q |
19 |
tccctctccgatcatattttacataattatcatatgagcattttgatttcataaaaaggacatat |
83 |
Q |
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| T |
2817575 |
tccctctccaatcatattttacataattatcatatgaccagtttgattttataaaaaggacatat |
2817511 |
T |
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