View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_low_10 (Length: 404)
Name: NF2563_low_10
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 7425487 - 7425850
Alignment:
| Q |
17 |
cataggttgatggctatttgttaaacagaatctgatgtaaggtgctgtgaagnnnnnnnnaacaaatttaacgaaagttgtatcatgataatacgttgac |
116 |
Q |
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| T |
7425487 |
cataggttgatggctatttgttaaacagaatctgatgtaaggtgctgtgaagttttttttaacaaatttaacgaaagttgcattatgataatacgttgac |
7425586 |
T |
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| Q |
117 |
atttcaactatgttggtaccacttttacnnnnnnnnnnn-------ctttgtgcggttattaatcctttaaaatctctcttaaggtattattaatataaa |
209 |
Q |
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| T |
7425587 |
atttcaactatgttggtaccactttgacaaaaaaaaaaaaaaaaaactctgtgcggtcattaatcctttaaaatctcacttaaagtattattaatataaa |
7425686 |
T |
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| Q |
210 |
atataaaaataaagggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaaccatgtctctgaagaa |
309 |
Q |
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| T |
7425687 |
atataaaaataaaaggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaa-----------aagaa |
7425775 |
T |
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| Q |
310 |
acattttcttaaacaactaagtaattgatctaacc-aactaaactattaacaaaaatgttggcatcggttagtct |
383 |
Q |
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| T |
7425776 |
acattttcttaaacaactaagtaattgatctaaccaaactaaactattaacaaaaatgttagcatcggttagtct |
7425850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 29493418 - 29493361
Alignment:
| Q |
237 |
gacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaac |
294 |
Q |
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| T |
29493418 |
gacataaaccaaactcatcaaaacaagataaacaaaaacgataagaaagtaagtcaac |
29493361 |
T |
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