View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2563_low_11 (Length: 391)
Name: NF2563_low_11
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_11 |
 | |
|
| [»] scaffold0929 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 6384018 - 6383805
Alignment:
| Q |
18 |
aagatgacttggttgacttacttcaatcatttatacacccaaaaaggctcaatatgcttctagagtttcctagttagggaagaatgagaattacaacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6384018 |
aagatgacttggttgacttacttcaatcatttatacacccaaaaaggctcaatatgcttctagagtttcctagttagggaagaatgagaattacaacaac |
6383919 |
T |
|
| Q |
118 |
tcaaaacaaaatgttacactttctcaaaccatgagtaactcactataaaactactagaaactccctaaacgacaagaaaaagacttgattacatactgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383918 |
tcaaaacaaaatgttacactttctcaaaccatgagtaactcactataaaactactagaaactccttaaacgacaagaaaaagacttgattacatactgaa |
6383819 |
T |
|
| Q |
218 |
aaacatcatatgat |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6383818 |
aaacatcatatgat |
6383805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 230 - 380
Target Start/End: Complemental strand, 6383735 - 6383585
Alignment:
| Q |
230 |
attttcaaccaaggaaataacataccttttcgacaaggtgttcagatcttcattttgtcccacttccgactaacttgcaacttccattttcaaggaattg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6383735 |
attttcaaccaaggaaataacataccttttcgacaaggtgttcagatcttcattttgtcccacttccgactaacttgtaacttccattttcaaggaattg |
6383636 |
T |
|
| Q |
330 |
aaatatttgaagaagataatccatggtttcatccacactcgaatcccctat |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383635 |
aaatatttgaagaagataatccatggtttcatccacactcgaatcccctat |
6383585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 1196 - 1157
Alignment:
| Q |
90 |
gttagggaagaatgagaattacaacaactcaaaacaaaat |
129 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1196 |
gttagggaagaaagagaattacaataactcaaaacaaaat |
1157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University