View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_low_13 (Length: 372)
Name: NF2563_low_13
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 283
Target Start/End: Complemental strand, 32753199 - 32752950
Alignment:
| Q |
33 |
tgccttgtgttaatggagctcagctttcaaattatgctactagaccc--acaaatggcaccattatgcttttcatttgtcatcttttatttatagctggt |
130 |
Q |
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| T |
32753199 |
tgccttgtgttaatggagctcagctttcaaattatgctactaaacccccacaaatggcaccattatgcttttcatttgtcatcttttatttatagctggt |
32753100 |
T |
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| Q |
131 |
tatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttgnnnnnnncaatgtggaaaacaaacaaa |
230 |
Q |
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| T |
32753099 |
tatatgct---aagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttccattgtttttatcaatgaggaaaacaaacaaa |
32753003 |
T |
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| Q |
231 |
ataacaataattggtcaacaatggaatctataatcccagttaatgcaccgtag |
283 |
Q |
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| T |
32753002 |
ataacaataattggtcaacaatggaatctataatcccagttaatgcaccgtag |
32752950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 32752892 - 32752828
Alignment:
| Q |
293 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgt |
357 |
Q |
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| T |
32752892 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgt |
32752828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 3282423 - 3282504
Alignment:
| Q |
119 |
tttatagctggttatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttg |
203 |
Q |
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| T |
3282423 |
tttatagctggctatatgct---aagtggatctgtcttccgcgattctcctgatgtaaagccactacaacgaacaatttcctttg |
3282504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 3284504 - 3284568
Alignment:
| Q |
293 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgt |
357 |
Q |
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| T |
3284504 |
tcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgt |
3284568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 3281928 - 3281965
Alignment:
| Q |
36 |
cttgtgttaatggagctcagctttcaaattatgctact |
73 |
Q |
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| T |
3281928 |
cttgtgttagtggagctcagctctcaaattatgctact |
3281965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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