View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_low_2 (Length: 487)
Name: NF2563_low_2
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Original strand, 3308059 - 3308520
Alignment:
| Q |
11 |
atgaacatggatttttgtggttacctctagcagtatcagaaaa-tttgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcagc |
109 |
Q |
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| T |
3308059 |
atgaacatggatttttgtggttacctctagcagtatcagaaaaatttgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcagc |
3308158 |
T |
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| Q |
110 |
ttcagaagccattataaaatgattatcaacttcactcaacacttgaatcatatccatattcactctctctttcactcttccaacaacttcttcatcacca |
209 |
Q |
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| T |
3308159 |
ttcagaagccattataaaatgattatcaacttcactcaacacttgaatcatatccatattcactctctctttcactcttccaacaacttcttcatcacca |
3308258 |
T |
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| Q |
210 |
tcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggaggag |
309 |
Q |
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| T |
3308259 |
tcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggaggag |
3308358 |
T |
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| Q |
310 |
gcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggcggc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3308359 |
gcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggctgc |
3308458 |
T |
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| Q |
410 |
gtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaagtaat |
471 |
Q |
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| T |
3308459 |
gtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaagtaat |
3308520 |
T |
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