View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2563_low_26 (Length: 248)

Name: NF2563_low_26
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2563_low_26
NF2563_low_26
[»] chr2 (3 HSPs)
chr2 (1-227)||(3103538-3103761)
chr2 (184-225)||(9155998-9156039)
chr2 (175-227)||(33498619-33498671)
[»] chr4 (1 HSPs)
chr4 (167-225)||(19230327-19230385)
[»] chr6 (1 HSPs)
chr6 (170-217)||(15443681-15443728)
[»] chr1 (4 HSPs)
chr1 (170-229)||(43328453-43328512)
chr1 (192-230)||(17080894-17080932)
chr1 (192-225)||(43609836-43609869)
chr1 (172-228)||(52097719-52097775)
[»] scaffold0205 (1 HSPs)
scaffold0205 (191-229)||(21423-21461)
[»] chr8 (3 HSPs)
chr8 (170-228)||(33697156-33697214)
chr8 (171-228)||(11815816-11815873)
chr8 (171-208)||(18646771-18646808)
[»] chr3 (5 HSPs)
chr3 (171-229)||(26643292-26643350)
chr3 (175-228)||(12929821-12929874)
chr3 (192-229)||(35990539-35990576)
chr3 (173-226)||(51497979-51498032)
chr3 (194-226)||(42088735-42088767)
[»] chr5 (1 HSPs)
chr5 (192-229)||(2611094-2611131)
[»] scaffold0024 (1 HSPs)
scaffold0024 (192-228)||(151415-151451)
[»] chr7 (1 HSPs)
chr7 (192-228)||(9483392-9483428)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3103761 - 3103538
Alignment:
Q  1 ttgatacattttttcttctaaagttcttaactctcaacaaatatgaatacaaatataacaaacaaacttcctagctatagcactaaaaaataaggcatgc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103761 ttgatacattttt-cttctaaagttcttaactctcaacaaatatgaatacaaatataacaaacaaacttcctagctatagcactaaaaaataaggcatgc 3103663  T
Q  101 aattagcatattatagttcatctagccatcatgtagatttgcatgacataaatgattatgaaaagcacaaacactgacacgtggacattagtaataattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  3103662 aattagcatattatagttcatctagccatcatgtagatttgcatgacataaatgactatg--aagcacaaacactgacacgtggacattagtaataattt 3103565  T
Q  201 gagaaaataagataattgaatgtaacc 227  Q
    |||||||||||||||||||||||||||    
T  3103564 gagaaaataagataattgaatgtaacc 3103538  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 9156039 - 9155998
Alignment:
Q  184 gacattagtaataatttgagaaaataagataattgaatgtaa 225  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  9156039 gacattagtagtaatttaagaaaataagaaaattgaatgtaa 9155998  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 33498619 - 33498671
Alignment:
Q  175 tgacacgtggacattagtaataatttgagaaaataagataattgaatgtaacc 227  Q
    |||||||| ||||  |||||||||||||||||||   ||||||||||||||||    
T  33498619 tgacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacc 33498671  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 19230385 - 19230327
Alignment:
Q  167 acaaacactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaa 225  Q
    |||||||||||||| |||||||   ||||||||||||||||||| |||||| |||||||    
T  19230385 acaaacactgacacatggacatagataataatttgagaaaataacataattcaatgtaa 19230327  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 15443681 - 15443728
Alignment:
Q  170 aacactgacacgtggacattagtaataatttgagaaaataagataatt 217  Q
    ||||||||||||| ||||| | ||||||||||||||||||| ||||||    
T  15443681 aacactgacacgtcgacatcaataataatttgagaaaataacataatt 15443728  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 43328453 - 43328512
Alignment:
Q  170 aacactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaaccac 229  Q
    ||||||||||||| |||| |  ||||||||||||||||| | |||||| |||||||||||    
T  43328453 aacactgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccac 43328512  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 17080932 - 17080894
Alignment:
Q  192 taataatttgagaaaataagataattgaatgtaaccact 230  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  17080932 taataatttgagaaaataacataattgaatgtaatcact 17080894  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 43609869 - 43609836
Alignment:
Q  192 taataatttgagaaaataagataattgaatgtaa 225  Q
    ||||||||||||||||||| ||||||||||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaa 43609836  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 52097719 - 52097775
Alignment:
Q  172 cactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaacca 228  Q
    |||||| |||| ||||||  |||||| |||||||||||| |||||| ||||||||||    
T  52097719 cactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaacca 52097775  T

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Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 21423 - 21461
Alignment:
Q  191 gtaataatttgagaaaataagataattgaatgtaaccac 229  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  21423 gtaatagtttgagaaaataaaataattgaatgtaaccac 21461  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 33697214 - 33697156
Alignment:
Q  170 aacactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaacca 228  Q
    |||||| ||| || ||||||  ||||||||||||||||||| |||||||||| ||||||    
T  33697214 aacactaacatgtcgacattgataataatttgagaaaataaaataattgaatataacca 33697156  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 11815816 - 11815873
Alignment:
Q  171 acactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaacca 228  Q
    |||||||||||| ||||  | |||||||||||||||||   |||||||||||||||||    
T  11815816 acactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 11815873  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 18646771 - 18646808
Alignment:
Q  171 acactgacacgtggacattagtaataatttgagaaaat 208  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  18646771 acactaacacttggacattagtaataatttgagaaaat 18646808  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 26643350 - 26643292
Alignment:
Q  171 acactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaaccac 229  Q
    |||||||||||| || | | |||||||||| ||||||||  ||||||||||||||||||    
T  26643350 acactgacacgtcgatactggtaataatttaagaaaatagaataattgaatgtaaccac 26643292  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 12929874 - 12929821
Alignment:
Q  175 tgacacgtggacattagtaataatttgagaaaataagataattgaatgtaacca 228  Q
    ||||||||| ||||  | |||||||||||||||||| |||| ||||||||||||    
T  12929874 tgacacgtgaacatcggcaataatttgagaaaataaaataaatgaatgtaacca 12929821  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 35990576 - 35990539
Alignment:
Q  192 taataatttgagaaaataagataattgaatgtaaccac 229  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  35990576 taataatttgagaaaataaaataactgaatgtaaccac 35990539  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 51497979 - 51498032
Alignment:
Q  173 actgacacgtggacattagtaataatttgagaaaataagataattgaatgtaac 226  Q
    ||||||||||  ||| |||||||||||||| ||||||  |||||||||||||||    
T  51497979 actgacacgtccacactagtaataatttgataaaatagaataattgaatgtaac 51498032  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 42088735 - 42088767
Alignment:
Q  194 ataatttgagaaaataagataattgaatgtaac 226  Q
    ||||||||||||||||| |||||||||||||||    
T  42088735 ataatttgagaaaataaaataattgaatgtaac 42088767  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 2611131 - 2611094
Alignment:
Q  192 taataatttgagaaaataagataattgaatgtaaccac 229  Q
    ||||||||||||||||||| || |||||||||||||||    
T  2611131 taataatttgagaaaataaaattattgaatgtaaccac 2611094  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 151451 - 151415
Alignment:
Q  192 taataatttgagaaaataagataattgaatgtaacca 228  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  151451 taataatttgagaaaataaaataattaaatgtaacca 151415  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 9483392 - 9483428
Alignment:
Q  192 taataatttgagaaaataagataattgaatgtaacca 228  Q
    ||||||||||||||||||  |||||||||||||||||    
T  9483392 taataatttgagaaaatagaataattgaatgtaacca 9483428  T

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