View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_low_27 (Length: 245)
Name: NF2563_low_27
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 54154576 - 54154336
Alignment:
| Q |
19 |
ttgtgtatggtataaaaatgagtattaaaattttcaatggtcaagattgaagaa---------------caggtttgttgttatagttttggtattttca |
103 |
Q |
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| T |
54154576 |
ttgtgtatggtataaaaatgagtattaaaattttcaatggtcaagattgaagaagggttgtttgaacaacaggtttgttgttatagttttggtattttca |
54154477 |
T |
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| Q |
104 |
agaagagtcttttaacaataatgcaattgtagttgtttttatgttaattaaaaatgtgttcttcctctttgtcaccattgcatcaagaagtcatgtgtat |
203 |
Q |
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| T |
54154476 |
agaagagtcttt-aacaataatgcaattgtagttgtttttatgttaattaaaaatgtgttcttcctctttgtcaccattgcatcaagaagtcatgtgtat |
54154378 |
T |
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| Q |
204 |
ttatggttacccgtaaattaagtattagaaaaagataatcct |
245 |
Q |
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| T |
54154377 |
ttatggttacccgtaaattaagtattagaaaaagataatcct |
54154336 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 1139763 - 1139831
Alignment:
| Q |
65 |
ttgaagaacaggtttgttgttatagttttggtattttcaagaagagtcttttaacaataatgcaattgta |
134 |
Q |
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| T |
1139763 |
ttgaataataggtttgttgttaaagttttgatatttttaaaaagagtc-tttaacaacaatgcaattgta |
1139831 |
T |
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