View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2563_low_32 (Length: 227)
Name: NF2563_low_32
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_32 |
 | |
|
| [»] chr6 (31 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3173390 - 3173616
Alignment:
| Q |
1 |
attgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3173390 |
attgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagt |
3173489 |
T |
|
| Q |
101 |
agttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3173490 |
agttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
3173589 |
T |
|
| Q |
201 |
tttttctaatgcaatgttaaagtcact |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3173590 |
tttttctaatgcaatgttaaagtcact |
3173616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 4488934 - 4488716
Alignment:
| Q |
5 |
aaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagtt |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4488934 |
aaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagtagtt |
4488835 |
T |
|
| Q |
105 |
ttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatttt |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
4488834 |
ttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatgtggctttctctcttcaaagttactcatctttgatatttt |
4488735 |
T |
|
| Q |
205 |
tctaatgcaatgttaaagt |
223 |
Q |
| |
|
||| || |||||||||||| |
|
|
| T |
4488734 |
tcttatccaatgttaaagt |
4488716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 4482254 - 4482473
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4482254 |
tgaaaccatcaaaggcttttggaccccttgattttagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagtag |
4482353 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatt |
202 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
4482354 |
ttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggttttttttctgcaaagttactcatctttgatatt |
4482453 |
T |
|
| Q |
203 |
tttctaatgcaatgttaaagt |
223 |
Q |
| |
|
|| | ||||||||||||||| |
|
|
| T |
4482454 |
ctt-ttatgcaatgttaaagt |
4482473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 4575844 - 4576048
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
4575844 |
tgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagcag |
4575943 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatt |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| | ||||||||||||| |||||||| |
|
|
| T |
4575944 |
ttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtggctttttctcttcaaagttactcatgattgatatt |
4576043 |
T |
|
| Q |
203 |
tttct |
207 |
Q |
| |
|
||||| |
|
|
| T |
4576044 |
tttct |
4576048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 4558514 - 4558683
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||| || |
|
|
| T |
4558514 |
tgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaatcctctaaggtgaagaag |
4558613 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt |
172 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
4558614 |
ttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggtttt |
4558683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 4507300 - 4507496
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| || |||||| || |
|
|
| T |
4507300 |
tgaaaccatcaaaggcattttcacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctcgaaggtgaagaag |
4507399 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgat |
199 |
Q |
| |
|
|| |||||||| ||||||| |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4507400 |
cttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtggttttctctttgcaaaattactcatctttgat |
4507496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4513718 - 4513498
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4513718 |
tgaaaccatcaaaagcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagtag |
4513619 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatt |
202 |
Q |
| |
|
|||||||| | | |||| || ||||||||||||||||| |||||||||| | ||||| |||||||||||||| ||||| | |||||||| | ||||| | |
|
|
| T |
4513618 |
ttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtggttttctgcttgcagaattactcatttctgataat |
4513519 |
T |
|
| Q |
203 |
tttctaatgcaatgttaaagt |
223 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
4513518 |
tttcttgtgcaatgttaaagt |
4513498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 4627540 - 4627732
Alignment:
| Q |
4 |
gaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagt |
103 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |
|
|
| T |
4627540 |
gaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagtaat |
4627639 |
T |
|
| Q |
104 |
tttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtt---ttctctttgcaaagttactcatc |
193 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |||| ||||| | ||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
4627640 |
tttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtggcttgattctctttgcaaagttactcatc |
4627732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 4572355 - 4572524
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| | |
|
|
| T |
4572355 |
tgaaaccatcaaaggcattttgacctcttgacttgagcaaccgtttgtgattgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaaa |
4572454 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt |
172 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
4572455 |
ttttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggtttt |
4572524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 4618690 - 4618887
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
4618690 |
tgaaaccatcaaaagcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagaag |
4618789 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
200 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||| | | ||| ||||||||||||| ||||||||||| | ||| ||||||| |
|
|
| T |
4618790 |
ctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtttcccatttttgata |
4618887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 4517729 - 4517894
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
4517729 |
tgaaaccatcaaaggcttttggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaagatgaagaag |
4517828 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg |
168 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4517829 |
ttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtgg |
4517894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 4612457 - 4612288
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||||| |||||| || |
|
|
| T |
4612457 |
tgaaaccaacaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacgaatgttatgtgaaagcctctaaggtgaagaag |
4612358 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt |
172 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4612357 |
ttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtggtttt |
4612288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 4594400 - 4594596
Alignment:
| Q |
4 |
gaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagt |
103 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
4594400 |
gaaaccatctaaggcatttggacctcttgatttgagcaaacgtttatgattgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagaagt |
4594499 |
T |
|
| Q |
104 |
tttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
200 |
Q |
| |
|
||||| ||||| ||||||| ||| ||||| ||||||| |||| |||| | ||||| |||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
4594500 |
tttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtggttttctgtttgcaaagtttcccatctttgata |
4594596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 4603510 - 4603682
Alignment:
| Q |
14 |
aaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtt |
113 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
4603510 |
aaggcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaatcctctaaggtgaaatagttttgctagtt |
4603609 |
T |
|
| Q |
114 |
tcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagtt |
186 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||||| | ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
4603610 |
tcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgttgttttctgtttgcaaagtt |
4603682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 4587027 - 4587190
Alignment:
| Q |
9 |
catcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgc |
108 |
Q |
| |
|
||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| || |
|
|
| T |
4587027 |
catcaaaggcatttggagctcttgacttaagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaatcctcgaaggtgaagaagtttagc |
4587126 |
T |
|
| Q |
109 |
tagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt |
172 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| |||||| |
|
|
| T |
4587127 |
tagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt |
4587190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 4471346 - 4471520
Alignment:
| Q |
46 |
tttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactgga |
145 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4471346 |
tttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctgga |
4471445 |
T |
|
| Q |
146 |
tatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatttttctaatgcaatgttaaagt |
223 |
Q |
| |
|
||||| | || || |||||||| ||| |||||||||| |||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
4471446 |
catggaatcaatacagcatgtggctttgtctttgcaaaattactcatatttg--atttttctaat-caatgttaaagt |
4471520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 4265796 - 4265607
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
4265796 |
tgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaag |
4265697 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcat |
192 |
Q |
| |
|
||| |||| || ||||||||||||||||||||||||| |||| |||| | ||||| |||||||| ||| ||||||||| |||||||| |
|
|
| T |
4265696 |
ctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtggctttggctttgcaaaattactcat |
4265607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 4562051 - 4562259
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggtt-atgtgaaagcctctaaagtgaagta |
101 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| | |
|
|
| T |
4562051 |
tgaaaccatcaaaggcattttcacctcttgattt-agcaaacgtttgtgattgtattcagtgttaacaaaggtttatgtgaaagcctcttaggtgaagca |
4562149 |
T |
|
| Q |
102 |
gttttgctagtttcaacaatgcattgatatggccttgaactggatatggag----ttaacactgcatgtggttttctctttgcaaagttactcatctttg |
197 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| || ||| | ||||||| |||| |||| |
|
|
| T |
4562150 |
gttttgctattttcaacaatgcattgatatgaccttgaactggaaatggagttaattaacactgcatgtggccttttctcttcaaagttggtcatgtttg |
4562249 |
T |
|
| Q |
198 |
atatttttct |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
4562250 |
atatttttct |
4562259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 4462623 - 4462785
Alignment:
| Q |
30 |
ttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgat |
129 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4462623 |
ttgaattgagcaagcaattgtgattgtattcagtgttgacaaaggttatgtgaaaacctctaaggtgaagtagttttcctagtttcaacaatgcattgat |
4462722 |
T |
|
| Q |
130 |
atggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcat |
192 |
Q |
| |
|
||||||||| |||| ||||| | ||||| |||||||| ||| |||||||||| |||||||| |
|
|
| T |
4462723 |
atggccttgggatggacatggaatcaacacagcatgtggctttgtctttgcaaaattactcat |
4462785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 4258915 - 4258750
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||| || |
|
|
| T |
4258915 |
tgaaaccatcaacggcattttcacctcttgatttgagcaaacgtttgtgattatattcagtgttgacaaaggttatgtgaaaacctttaaagtgaagaag |
4258816 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg |
168 |
Q |
| |
|
|| |||||||| ||||||| |||||||||||||||| ||||||||||| | ||||| |||||||| |
|
|
| T |
4258815 |
cttagctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg |
4258750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 4565421 - 4565622
Alignment:
| Q |
6 |
aaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttt |
105 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||| |||||| ||||| |
|
|
| T |
4565421 |
aaccatctaaggcatttggacctcttgattttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttt |
4565520 |
T |
|
| Q |
106 |
tgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatattttt |
205 |
Q |
| |
|
||| ||||| ||||||| ||| ||||| ||||||| |||| |||| | ||||| |||||||||||||| |||||||| | | ||||||||| |||||| |
|
|
| T |
4565521 |
tgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtggttttctgtttgcaaaacttcccatctttgaaattttt |
4565620 |
T |
|
| Q |
206 |
ct |
207 |
Q |
| |
|
|| |
|
|
| T |
4565621 |
ct |
4565622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 4569463 - 4569611
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
4569463 |
tgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgatt----tcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaag |
4569558 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagtta |
155 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
4569559 |
ttttgctagtttcaataatggattgatatggccttgaagtggatatggagtta |
4569611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 4581403 - 4581568
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
4581403 |
tgaaaccatcaaacgcttttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaag |
4581502 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg |
168 |
Q |
| |
|
||||||||| | | |||| | ||||||| ||||||| |||||||||| | |||||||||||||| |
|
|
| T |
4581503 |
ctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtgg |
4581568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 4623696 - 4623861
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||| || ||| || |
|
|
| T |
4623696 |
tgaaaccatcaaaggcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgtgaccaaaggttatgtgaaagcctttaaggtaaagaag |
4623795 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg |
168 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||||| | | ||||| |||||||| |
|
|
| T |
4623796 |
ctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtgg |
4623861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 4497899 - 4497763
Alignment:
| Q |
88 |
tctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagtta |
187 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||| ||| ||| | |||||||| |
|
|
| T |
4497899 |
tctaaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggctttttctcttcaaagtta |
4497800 |
T |
|
| Q |
188 |
ctcatctttgatat-ttttctaatgcaatgttaaagt |
223 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||||| |
|
|
| T |
4497799 |
ctcatctttgatattttttcttatccaatgttaaagt |
4497763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4503034 - 4502943
Alignment:
| Q |
1 |
attgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
4503034 |
attgaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaatcctctaa |
4502943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 4255545 - 4255395
Alignment:
| Q |
6 |
aaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttt |
105 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||| ||||||||||||||||| ||||| |||||| ||| ||| ||||||| ||| |
|
|
| T |
4255545 |
aaccatcaaaggcttttggacctcttgattcgagcaagcgtttgtgattgtattcggtgttgacaaag------------cctttaagatgaagtaattt |
4255458 |
T |
|
| Q |
106 |
tgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg |
168 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
4255457 |
tgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtgg |
4255395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 4472612 - 4472712
Alignment:
| Q |
120 |
atgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatttttctaatgcaatgtta |
219 |
Q |
| |
|
||||||||||||||||||| |||| ||||| | |||||||||||||||||| || ||||||| |||||||| | |||| |||||||||| |||||||| |
|
|
| T |
4472612 |
atgcattgatatggccttggggtggacatggaatcaacactgcatgtggttttgtcattgcaaaattactcatatctgatttttttctaat-caatgtta |
4472710 |
T |
|
| Q |
220 |
aa |
221 |
Q |
| |
|
|| |
|
|
| T |
4472711 |
aa |
4472712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 4599579 - 4599721
Alignment:
| Q |
30 |
ttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgat |
129 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || |||||||||| ||| ||||||| |||||| | ||||||||||| | ||| |||||| |
|
|
| T |
4599579 |
ttgatttgagcaagcgtttgtgattgtactcggtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaatagattgat |
4599678 |
T |
|
| Q |
130 |
atggccttgaactggatatggagttaacactgcatgtggtttt |
172 |
Q |
| |
|
|| ||||||| ||| ||||| | || ||||||||| ||||| |
|
|
| T |
4599679 |
atttccttgaattggtaatggaatcaatactgcatgtagtttt |
4599721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 4493401 - 4493505
Alignment:
| Q |
110 |
agtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgatatttttctaa |
209 |
Q |
| |
|
||||||| || |||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| |||||||||||| || ||| ||||||||| | |
|
|
| T |
4493401 |
agtttcagcattgcattgatatgaccttgagctggaaatggaatcaacactgcatgtggttttc----tgcaaagttactaatgttt-ctatttttctta |
4493495 |
T |
|
| Q |
210 |
tgcaatgtta |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
4493496 |
tgcaatgtta |
4493505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 4298237 - 4298174
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtt |
66 |
Q |
| |
|
||||||||||||| || ||||||||| |||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
4298237 |
tgaaaccatcaaaagcttttggaccccttgattcgagcaggtgtttgtgattgtattcggtgtt |
4298174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 1282822 - 1283005
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1282822 |
tgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtattaacaaaggttatgtaaaagcctctaaggtgaagtag |
1282921 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagtt |
186 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||||||| | ||||| |||||||||||| | ||||||||||| |
|
|
| T |
1282922 |
ttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggttttgtgtttgcaaagtt |
1283005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 35776276 - 35776316
Alignment:
| Q |
44 |
cgtttgtgattgtattcagtgtttacaaaggttatgtgaaa |
84 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35776276 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35776316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 35842083 - 35842123
Alignment:
| Q |
44 |
cgtttgtgattgtattcagtgtttacaaaggttatgtgaaa |
84 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35842083 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35842123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 35854591 - 35854631
Alignment:
| Q |
44 |
cgtttgtgattgtattcagtgtttacaaaggttatgtgaaa |
84 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35854591 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35854631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 35869200 - 35869240
Alignment:
| Q |
44 |
cgtttgtgattgtattcagtgtttacaaaggttatgtgaaa |
84 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35869200 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35869240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 20862549 - 20862328
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
||||||||||||||| |||||||| |||| || ||||| |||||||||||||||||||| || ||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
20862549 |
tgaaaccatcaaagggtattggacccattgacttaagcaagcgtttgtgattgtattcagtattgacaaatgttatgtaaaagcctctaaggtgaagtag |
20862450 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatct-ttgatat |
201 |
Q |
| |
|
|||||||||||| |||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | | | | |
|
|
| T |
20862449 |
ttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggttttttctcagcaaaattactcatctctggtttt |
20862350 |
T |
|
| Q |
202 |
ttttctaatgcaatgttaaagt |
223 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
20862349 |
ttttcttatgaaatgttaaagt |
20862328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 1675910 - 1676107
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||||||||| ||||| || |
|
|
| T |
1675910 |
tgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataag |
1676009 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
200 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||| | ||| ||||||| |
|
|
| T |
1676010 |
ttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgattttctgtttgcaaagtttcccatttttgata |
1676107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 2189 - 1993
Alignment:
| Q |
4 |
gaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagt |
103 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
2189 |
gaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagc |
2090 |
T |
|
| Q |
104 |
tttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
200 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||| | | ||| ||||||||||||| ||||||||||| | ||| ||||||| |
|
|
| T |
2089 |
tttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtttcccatttttgata |
1993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 2214 - 2404
Alignment:
| Q |
4 |
gaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagt |
103 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
2214 |
gaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagc |
2313 |
T |
|
| Q |
104 |
tttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatct |
194 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||| | ||||| |||||||||||| | |||||||| ||||||||| |
|
|
| T |
2314 |
tttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggttttttgtttgcaaaactactcatct |
2404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 1147 - 1344
Alignment:
| Q |
3 |
tgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtag |
102 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||||||||| ||||| || |
|
|
| T |
1147 |
tgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataag |
1246 |
T |
|
| Q |
103 |
ttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgata |
200 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||||||| | ||||| ||||||| |||||| ||||||||||| | ||| ||||||| |
|
|
| T |
1247 |
ttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgattttctgtttgcaaagtttcccatttttgata |
1344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 3088161 - 3088330
Alignment:
| Q |
30 |
ttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgat |
129 |
Q |
| |
|
||||||| ||||| || |||||||||||||| || || ||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||| ||| || |
|
|
| T |
3088161 |
ttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttat |
3088260 |
T |
|
| Q |
130 |
atggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgat |
199 |
Q |
| |
|
||| ||||||| |||||||||| | ||||| |||||||| ||| | | |||||| ||||||||||||| |
|
|
| T |
3088261 |
atgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgat |
3088330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 24104482 - 24104673
Alignment:
| Q |
1 |
attgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagt |
100 |
Q |
| |
|
|||||||||||||| | ||| ||| | |||||| |||||| ||||||||||||||||| ||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
24104482 |
attgaaaccatcaagagaattaggatctcttgattcgagcaagcgtttgtgattgtattcggtgttcacgaaggttatgtgaaagcctctaaggtgaaga |
24104581 |
T |
|
| Q |
101 |
agttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcat |
192 |
Q |
| |
|
|| ||| ||||||| ||||||||||||||||| ||||||| |||| |||| | ||||| ||||| || ||| |||| |||| |||||||| |
|
|
| T |
24104582 |
agctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatgcggctttggctttacaaaattactcat |
24104673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University