View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_low_4 (Length: 465)
Name: NF2563_low_4
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 447
Target Start/End: Complemental strand, 42592854 - 42592410
Alignment:
| Q |
3 |
ccttaagccaattgcatttgcttatagacaaacacaggtgcaagaagtcgagcaagaagaattaaccttgttagcactagtaggtctcaaatacaagtgt |
102 |
Q |
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| T |
42592854 |
ccttaagccaattgcacttgcttatagacaaacacaagtgcaagaactcaagcaagatgaattgaccttgttggcactggtaggtctcaaatacaagtgt |
42592755 |
T |
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| Q |
103 |
caagaatcgacaaaattagctttgaaaaatctgcaaaataaaggaatacagatcaaattggtctcggaggatgacatcatggtagtgaaagaaacagctt |
202 |
Q |
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| T |
42592754 |
cgagaatcgacaaaaaaagctttgaaaaatctgcaaaatgatggaatacatatcaaattggtctcgacggatgacatcatggtagtgaaagaaacagctt |
42592655 |
T |
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| Q |
203 |
gtgaactgggaatagaagtgccggtacacggacaccttgaaggaaaaggacttcaagatttgaatgacaaagctagattagttaaagtggataaagccgt |
302 |
Q |
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| T |
42592654 |
gtgaactgggaatagaagtgccggtagacggacaccttgaaggaaaagaacttcaatacttgaatggcaaagctagattagttaaactgggtaaagccat |
42592555 |
T |
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| Q |
303 |
tgtaatgggaagtttcaatcttaaagacaagcttctcatgttgcggtgtttgcaagacaatggtcacgtggttgcattcattgaacaacaaaggttgatg |
402 |
Q |
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| T |
42592554 |
tgcaatgggaagcttcagtcctgaagacaagcttctcatggtacgatgtttgcaagataaaggtgatgtggttgcattcattgaaacacaacagttgatg |
42592455 |
T |
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| Q |
403 |
actaatcatacttcagaagttctaaagctagctgatgtaggaata |
447 |
Q |
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| T |
42592454 |
actaatcatacttcagaagttctaaagatagctgatgcaggaata |
42592410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 4091932 - 4092236
Alignment:
| Q |
10 |
ccaattgcatttgcttatagacaaacacaggtgcaagaagtcgagcaagaagaattaaccttgttagcactagtaggtctcaaatacaagtgtcaagaat |
109 |
Q |
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| T |
4091932 |
ccaattgcatttgcttatagaaaaacgtatttgcaggtactcgagcaagacgatttgaccttgttagctctgataggtttcaaggaaaaatctcgagaat |
4092031 |
T |
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| Q |
110 |
cgacaaaattagctttgaaaaatctgcaaaataaaggaatacagatcaaattggtctcggaggatgacatcatggtagtgaaagaaacagcttgtgaact |
209 |
Q |
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| T |
4092032 |
cgataaaatcagctttgcaaggtgtccaaaatactggaataaagataaaattgatctcagaggatgacatcgatttagttgaagagatagcttatgaact |
4092131 |
T |
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| Q |
210 |
gggaatagaagtgccggtacacggacaccttgaaggaaaaggacttcaagatttgaatgacaaagctagattagttaaagtggataaagccgttgtaatg |
309 |
Q |
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| T |
4092132 |
gggaatagaagtgccggtaggcggtcaccttgagggaaaagaatttaaggatttgcatgaaggagctagattcgatgaagtggataaagccatagcaatg |
4092231 |
T |
|
| Q |
310 |
ggaag |
314 |
Q |
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||||| |
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| T |
4092232 |
ggaag |
4092236 |
T |
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