View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2563_low_5 (Length: 464)
Name: NF2563_low_5
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2563_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 53675055 - 53674624
Alignment:
| Q |
17 |
ggaggggaccaaattttagtaagtactaagatgaagagtattttagagggaatcaaaaatatagttgaccctgtctgtcatataatggttagactttaat |
116 |
Q |
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| T |
53675055 |
ggagtggaccaaattttagtaagtactaagatgaagagtattttagagggaataaaaaatatagttgaccctgtctgtcatataatggttagactttaat |
53674956 |
T |
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| Q |
117 |
atggtttgctattatagtcgaagaatgctgatgaaaacctcattatcaggttatgttgggggcaaaagtggcagtgatttccactgtaggttgtggttta |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||| |||||| |||||| |||||||| |
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| T |
53674955 |
atggtttgctattagagtcgaagaatgctgatgaaaacatcattatcaggttaatttggaggcaaaagtggcattgagttccacagtaggtggtggttta |
53674856 |
T |
|
| Q |
217 |
gtggaggaagccaagtcaatttctgctgattttcttcttcttcttggcggaacaagaaacaaaacgaataagtaagaactcatcagtgtaacatttattc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
53674855 |
gtggaggaagccaagtcaatttctgctgattttcttcttcttcttggcggaacaagaaacaaaacaattaagtaagaactcatcagtgtaacatttattc |
53674756 |
T |
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| Q |
317 |
aaatcatttataaagatctaagcatttgacaaccccctttatcattttttatagaattggcacctctaaaggaattaccaagtattgctttgagcatgtg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53674755 |
aaatcatttataaagatctaagcatttgacaaccccctttatcattgtttatagaattggcacctctaaaggaattaccaattattgctttgagcatgtg |
53674656 |
T |
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| Q |
417 |
catgaaggctgcacaattgtctcagttggaag |
448 |
Q |
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| T |
53674655 |
catgaaggctgcacaattgtctcagttggaag |
53674624 |
T |
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