View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2563_low_8 (Length: 426)

Name: NF2563_low_8
Description: NF2563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2563_low_8
NF2563_low_8
[»] chr8 (8 HSPs)
chr8 (19-391)||(18529642-18530016)
chr8 (25-115)||(18535087-18535177)
chr8 (207-243)||(30213932-30213968)
chr8 (140-250)||(27137841-27137951)
chr8 (276-321)||(27137733-27137778)
chr8 (275-321)||(20049786-20049832)
chr8 (284-320)||(14547738-14547774)
chr8 (291-323)||(15598279-15598311)
[»] chr1 (3 HSPs)
chr1 (133-243)||(26858607-26858717)
chr1 (301-339)||(40817736-40817774)
chr1 (207-236)||(21721490-21721519)
[»] chr4 (11 HSPs)
chr4 (130-243)||(14116424-14116537)
chr4 (90-173)||(21546118-21546201)
chr4 (158-243)||(13929430-13929515)
chr4 (127-236)||(11442085-11442194)
chr4 (127-236)||(11551501-11551610)
chr4 (277-322)||(11011616-11011661)
chr4 (283-338)||(17133383-17133436)
chr4 (317-373)||(18949797-18949853)
chr4 (89-139)||(39938287-39938337)
chr4 (105-173)||(6115863-6115930)
chr4 (132-243)||(8189728-8189837)
[»] chr2 (6 HSPs)
chr2 (128-243)||(25907951-25908066)
chr2 (61-141)||(21539030-21539110)
chr2 (127-243)||(19693385-19693501)
chr2 (128-240)||(12845697-12845809)
chr2 (197-236)||(13892217-13892256)
chr2 (197-236)||(14032342-14032381)
[»] chr3 (5 HSPs)
chr3 (127-249)||(9829498-9829618)
chr3 (275-320)||(27685549-27685594)
chr3 (207-236)||(12759109-12759138)
chr3 (291-339)||(17769651-17769699)
chr3 (291-339)||(19070952-19071000)
[»] chr5 (3 HSPs)
chr5 (127-243)||(19761265-19761381)
chr5 (24-173)||(25954804-25954952)
chr5 (127-189)||(17246011-17246073)
[»] scaffold0425 (1 HSPs)
scaffold0425 (127-190)||(2544-2607)
[»] chr7 (8 HSPs)
chr7 (78-136)||(4514405-4514463)
chr7 (59-140)||(23182846-23182928)
chr7 (127-243)||(7145248-7145364)
chr7 (207-243)||(26454143-26454179)
chr7 (275-321)||(12223081-12223126)
chr7 (207-235)||(4031835-4031863)
chr7 (290-374)||(4514645-4514729)
chr7 (89-145)||(21633734-21633790)
[»] scaffold0669 (1 HSPs)
scaffold0669 (105-249)||(4393-4534)
[»] chr6 (2 HSPs)
chr6 (276-343)||(4098234-4098297)
chr6 (291-344)||(12870654-12870706)
[»] scaffold0008 (2 HSPs)
scaffold0008 (275-338)||(9838-9900)
scaffold0008 (275-338)||(20231-20293)
[»] scaffold1339 (1 HSPs)
scaffold1339 (291-323)||(1723-1755)
[»] scaffold0105 (1 HSPs)
scaffold0105 (132-243)||(16303-16412)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 18530016 - 18529642
Alignment:
Q  19 tacctgctcta-ttatttctctcatgtttaaggactttagtagtttgaagaacacacaacacttcgaacaatttacaagagcaaaatctctgtcaaattc 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18530016 tacctgctctaattatttctctcatgtttaaggactttagtagtttgaagaacacacaacacttcgaacaatttacaagagcaaaatctctgtcaaattc 18529917  T
Q  118 aaaagtcttcaaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctcta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  18529916 aaaagtcttcaaacacttagaaaaattcgtacaaactttaaatcttagaatatctcaagtgtttagaagtcatttgttctttaagttagttacacctcta 18529817  T
Q  218 attgtatatcaagtgtaaacacaatcccttttactgtgtatttgagcaaattataatcttgtgtatttgagcaaattgtaatcttgtgtgattatagtta 317  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  18529816 actgtatatcaagtgtaaacacaatcccttttactgtgtatttgagcaaattataatcttgtgtatttgagcaaattataatcttgtgtgattatagtga 18529717  T
Q  318 aaaaattcattgaaagtgcaaaggaaccggatgtaacctcagattgtggggtgaac-aggataaaatgttgtgtt 391  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  18529716 aaaaattcattgaaagtgcaaaggaactggatgtaacctctgattgtggggtgaactaggataaaatgttgtgtt 18529642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 18535177 - 18535087
Alignment:
Q  25 ctctattatttctctcatgtttaaggactttagtagtttgaagaacacacaacacttcgaacaatttacaagagcaaaatctctgtcaaat 115  Q
    ||||||||||||||||  ||||||  ||   |||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  18535177 ctctattatttctctccggtttaacaacccgagtagtttgaagaacatacaacacttcgaacaatttacaagagccaaatctctatcaaat 18535087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 30213968 - 30213932
Alignment:
Q  207 ttacacctctaattgtatatcaagtgtaaacacaatc 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  30213968 ttacacctctaattgtatatcaagtgtaaacacaatc 30213932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 27137951 - 27137841
Alignment:
Q  140 aaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatcaagtgtaaacac 239  Q
    |||||| ||||| |||| ||||||||||| |||| ||| ||||||||||||||    ||||| ||  |||||||| |  ||||||||||| |||||| ||    
T  27137951 aaattcttacaagctttcaatcttagaatttcttaagtatttagaagtcattttcactttaactttcttacacctttggttgtatatcaaatgtaaaaac 27137852  T
Q  240 aatccctttta 250  Q
    |||| ||||||    
T  27137851 aatctctttta 27137841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 27137778 - 27137733
Alignment:
Q  276 ttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaa 321  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||    
T  27137778 ttgtgtgtttgagcaaattgtaatcttgtgtgactatagtgaaaaa 27137733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 20049786 - 20049832
Alignment:
Q  275 cttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaa 321  Q
    ||||||| ||||||||||||||||| ||||| ||||||||| |||||    
T  20049786 cttgtgtgtttgagcaaattgtaatattgtgagattatagtgaaaaa 20049832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 14547774 - 14547738
Alignment:
Q  284 ttgagcaaattgtaatcttgtgtgattatagttaaaa 320  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  14547774 ttgagcgaattgtaatcttgtgtgattatagtaaaaa 14547738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 15598311 - 15598279
Alignment:
Q  291 aattgtaatcttgtgtgattatagttaaaaaat 323  Q
    ||||||||||||||||||||||||| |||||||    
T  15598311 aattgtaatcttgtgtgattatagtaaaaaaat 15598279  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 26858607 - 26858717
Alignment:
Q  133 cttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatcaagtg 232  Q
    ||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||| |||   ||||||||| ||| || |||||||||||||||||||    
T  26858607 cttagaaaaattcttacaaacttttaatcttagaatttcttaagtgtttagaagtcacttgcactttaagttaattatacttctaattgtatatcaagtg 26858706  T
Q  233 taaacacaatc 243  Q
    |||| ||||||    
T  26858707 taaaaacaatc 26858717  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 40817736 - 40817774
Alignment:
Q  301 ttgtgtgattatagttaaaaaattcattgaaagtgcaaa 339  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  40817736 ttgtgtgattatagtgaaaaaattcattggaagtgcaaa 40817774  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 21721490 - 21721519
Alignment:
Q  207 ttacacctctaattgtatatcaagtgtaaa 236  Q
    ||||||||||||||||||||||||||||||    
T  21721490 ttacacctctaattgtatatcaagtgtaaa 21721519  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 14116537 - 14116424
Alignment:
Q  130 acacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatcaa 229  Q
    ||||||| |||||||| |||||||||| ||||||||||| | || ||||||||||||||| || |  ||||||||  |||||||||| ||||||||||||    
T  14116537 acacttaaaaaaattcttacaaactttcaatcttagaattttttaagtgtttagaagtcacttatactttaagtttattacacctctgattgtatatcaa 14116438  T
Q  230 gtgtaaacacaatc 243  Q
    |||||| |||||||    
T  14116437 gtgtaagcacaatc 14116424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 21546118 - 21546201
Alignment:
Q  90 ttacaagagcaaaatctctgtcaaattcaaaagtcttcaaacacttagaaaaattcgtacaaactttaaatcttagaatatctt 173  Q
    ||||||| || ||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||   |||||||||| ||||    
T  21546118 ttacaagtgctaaaactctgtcaaattcaaaagtattcaaacacttaaaaaaattcttacaaacttagtatcttagaatttctt 21546201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 13929430 - 13929515
Alignment:
Q  158 aatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatcaagtgtaaacacaatc 243  Q
    ||||||||||| |||| |||||| |||||||  ||  | ||||||||| |||||||||| |||||||||||||| |||||||||||    
T  13929430 aatcttagaatttcttaagtgttcagaagtcgctttctctttaagttacttacacctctgattgtatatcaagtataaacacaatc 13929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 11442194 - 11442085
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatat 226  Q
    |||| |||||||||||||| |||||||||| || |||||||| | || |||||| |||||||| |||   |||| |||  ||| |||||| |||||||||    
T  11442194 caaatacttagaaaaattcttacaaactttgaaccttagaattttttaagtgttcagaagtcacttgcactttaggttttttatacctctgattgtatat 11442095  T
Q  227 caagtgtaaa 236  Q
    ||||| ||||    
T  11442094 caagtttaaa 11442085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 11551501 - 11551610
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatat 226  Q
    |||| |||||||||||||| |||||||||| || |||||||| | || |||||| |||||||| |||   |||| |||  ||| |||||| |||||||||    
T  11551501 caaatacttagaaaaattcttacaaactttgaaccttagaattttttaagtgttcagaagtcacttgcactttaggttttttatacctctgattgtatat 11551600  T
Q  227 caagtgtaaa 236  Q
    ||||| ||||    
T  11551601 caagtttaaa 11551610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 11011616 - 11011661
Alignment:
Q  277 tgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaaa 322  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||    
T  11011616 tgtgtgtttgagaaaattgtaatcttgtgtgattatagtaaaaaaa 11011661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 17133436 - 17133383
Alignment:
Q  283 tttgagcaaattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaa 338  Q
    |||||| |||||||||||||||||||||| |||   ||||||||||||||||||||    
T  17133436 tttgagtaaattgtaatcttgtgtgattacagt--gaaaattcattgaaagtgcaa 17133383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 18949853 - 18949797
Alignment:
Q  317 aaaaaattcattgaaagtgcaaaggaaccggatgtaacctcagattgtggggtgaac 373  Q
    |||||||||||||||||||||||||||| ||| |||| ||| | || ||||||||||    
T  18949853 aaaaaattcattgaaagtgcaaaggaactggaagtaatctcgggttatggggtgaac 18949797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 39938337 - 39938287
Alignment:
Q  89 tttacaagagcaaaatctctgtcaaattcaaaagtcttcaaacacttagaa 139  Q
    ||||||||||| |||||| ||||||||||||||   |||||||||||||||    
T  39938337 tttacaagagccaaatctatgtcaaattcaaaatcattcaaacacttagaa 39938287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 6115930 - 6115863
Alignment:
Q  105 ctctgtcaaattcaaaagtcttcaaacacttagaaaaattcgtacaaactttaaatcttagaatatctt 173  Q
    ||||||||||||||||||    ||||||||||| ||||||| ||| ||||||| |||||||||| ||||    
T  6115930 ctctgtcaaattcaaaagcgcacaaacacttag-aaaattcttaccaactttagatcttagaatttctt 6115863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 8189837 - 8189728
Alignment:
Q  132 acttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatcaagt 231  Q
    |||||||||||||| | |||||||||||||| | ||| |||| |||||| | |||||| |||   ||||||||  |||||| | | ||||  ||||||||    
T  8189837 acttagaaaaattcttccaaactttaaatctcataatttcttaagtgttcataagtcacttgcactttaagtttcttacacatatgattg--tatcaagt 8189740  T
Q  232 gtaaacacaatc 243  Q
    || |||||||||    
T  8189739 gtcaacacaatc 8189728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 25907951 - 25908066
Alignment:
Q  128 aaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatc 227  Q
    ||||||||| |||||||| || ||||||| ||||||||||| |||| ||||||| ||||||| ||     |||||||| |||||||||| ||| ||||||    
T  25907951 aaacacttacaaaaattcttaaaaacttttaatcttagaatttcttaagtgtttggaagtcacttacacattaagttacttacacctcttattctatatc 25908050  T
Q  228 aagtgtaaacacaatc 243  Q
    ||||||||||||||||    
T  25908051 aagtgtaaacacaatc 25908066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 21539030 - 21539110
Alignment:
Q  61 tttgaagaacacacaacacttcgaacaatttacaagagcaaaatctctgtcaaattcaaaagtcttcaaacacttagaaaa 141  Q
    ||||||||| |  |||||||| ||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||    
T  21539030 tttgaagaatatgcaacactttgaacaatttacaatagccaaacctctgtcaaattcaaaagtcttaaaacacttagaaaa 21539110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 19693385 - 19693501
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatat 226  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||| |||| | |  |  ||||||| |||   ||||||||  |||||||||| |||||||||    
T  19693385 caaatacttagagaaatttgtacaaactttcaatcttagaatttcttaattaatatgaagtcacttgcactttaagttttttacacctctgattgtatat 19693484  T
Q  227 caagtgtaaacacaatc 243  Q
    ||| |||||||||||||    
T  19693485 caaatgtaaacacaatc 19693501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 12845697 - 12845809
Alignment:
Q  128 aaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatc 227  Q
    |||||||||||||||||| |||||  ||| ||||||||||| |||| |||||| | |||||| |||   || ||  |  |||||||| | ||||||||||    
T  12845697 aaacacttagaaaaattcttacaagttttcaatcttagaatttcttaagtgttcataagtcacttgcacttgaacatgtttacacctttgattgtatatc 12845796  T
Q  228 aagtgtaaacaca 240  Q
    || ||||||||||    
T  12845797 aactgtaaacaca 12845809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 13892256 - 13892217
Alignment:
Q  197 tttaagttagttacacctctaattgtatatcaagtgtaaa 236  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  13892256 tttaagtttcttacacctctaattgtatatcaagtgtaaa 13892217  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 14032381 - 14032342
Alignment:
Q  197 tttaagttagttacacctctaattgtatatcaagtgtaaa 236  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  14032381 tttaagtttcttacacctctaattgtatatcaagtgtaaa 14032342  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 9829498 - 9829618
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatat 226  Q
    |||||||||||| |||||| |||||| || | |||||||||| |||| ||| || ||||||||||    | |||| ||  ||||||||||||||||||||    
T  9829498 caaacacttagagaaattcttacaaatttcatatcttagaatttcttaagtattcagaagtcattga--acttaaatttattacacctctaattgtatat 9829595  T
Q  227 caagtgtaaacacaatccctttt 249  Q
    ||||||||||||||||| |||||    
T  9829596 caagtgtaaacacaatctctttt 9829618  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 27685594 - 27685549
Alignment:
Q  275 cttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaa 320  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||||    
T  27685594 cttgtgtgtttgagcaaattgtaatcctgtgtgattatagtgaaaa 27685549  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 12759138 - 12759109
Alignment:
Q  207 ttacacctctaattgtatatcaagtgtaaa 236  Q
    ||||||||||||||||||||||||||||||    
T  12759138 ttacacctctaattgtatatcaagtgtaaa 12759109  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 17769651 - 17769699
Alignment:
Q  291 aattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaaa 339  Q
    ||||||||||||||||||||||||| |||||  || ||| |||||||||    
T  17769651 aattgtaatcttgtgtgattatagtgaaaaatctccttggaagtgcaaa 17769699  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 19070952 - 19071000
Alignment:
Q  291 aattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaaa 339  Q
    ||||||||||||||||||||||||| |||||  || ||| |||||||||    
T  19070952 aattgtaatcttgtgtgattatagtgaaaaatctccttggaagtgcaaa 19071000  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 19761381 - 19761265
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatat 226  Q
    |||||||||| ||||  || ||||||| || ||||||| ||| |||| ||| ||||||||||| |||   ||| ||||| |||||| ||| |||||||||    
T  19761381 caaacacttataaaatatcttacaaacattcaatcttaaaatttcttaagtctttagaagtcacttgaactttgagttaattacacttctgattgtatat 19761282  T
Q  227 caagtgtaaacacaatc 243  Q
    |||||||||||||||||    
T  19761281 caagtgtaaacacaatc 19761265  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 25954804 - 25954952
Alignment:
Q  24 gctctattatttctctcatgtttaaggactttagtagtttgaagaacacacaacacttcgaacaatttacaagagcaaaatctctgtcaaattcaaaagt 123  Q
    ||||| ||||||||||| | | ||||||| | || ||||||||||||  |  | |||||  | | |||||||| |  ||| |||||||||||| ||||||    
T  25954804 gctctcttatttctctcctatataaggacatgagaagtttgaagaacttatgagacttcacatattttacaagtgtcaaaactctgtcaaatttaaaagt 25954903  T
Q  124 cttcaaacacttagaaaaattcgtacaaactttaaatcttagaatatctt 173  Q
       ||||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  25954904 gcacaaacacttagaaaa-ttcttacaaactttatatcttagaatttctt 25954952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 17246073 - 17246011
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtca 189  Q
    ||||||||||||||||||| || ||||||| |||| |||||| |||| |||||| | ||||||    
T  17246073 caaacacttagaaaaattcttataaactttcaatcatagaatttcttaagtgttcataagtca 17246011  T

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Target: scaffold0425 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 2607 - 2544
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcat 190  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||  |||||| |||||||||    
T  2607 caaacacttagagaaattcttacaaactttcaatcttagaatatctcaagtgttcagaagtcat 2544  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 4514405 - 4514463
Alignment:
Q  78 acttcgaacaatttacaagagcaaaatctctgtcaaattcaaaagtcttcaaacactta 136  Q
    |||||||||||||||||||| |  || |||||||||||||||||| |||||||||||||    
T  4514405 acttcgaacaatttacaagaccccaacctctgtcaaattcaaaagccttcaaacactta 4514463  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 23182928 - 23182846
Alignment:
Q  59 agtttgaagaacacacaacacttcgaacaa-tttacaagagcaaaatctctgtcaaattcaaaagtcttcaaacacttagaaa 140  Q
    ||||||||||| ||| ||||||| ||| || |||| |||||  ||| |||||||||||||||||| |||||||||||||||||    
T  23182928 agtttgaagaatacataacactttgaaaaaatttataagagtcaaacctctgtcaaattcaaaagccttcaaacacttagaaa 23182846  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 7145248 - 7145364
Alignment:
Q  127 caaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatat 226  Q
    ||||||||||||||||| | |||| | ||| ||||||||||| ||||||||||| | || | |  ||   ||||||||| |||||||| | |||||| ||    
T  7145248 caaacacttagaaaaatgcttacagagtttcaatcttagaatttctttagtgttaaaaaattacatgcactttaagttaattacacctatgattgtaaat 7145347  T
Q  227 caagtgtaaacacaatc 243  Q
    |||||||||||| ||||    
T  7145348 caagtgtaaacataatc 7145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 26454143 - 26454179
Alignment:
Q  207 ttacacctctaattgtatatcaagtgtaaacacaatc 243  Q
    |||||||||| ||||||||||||||||||||||||||    
T  26454143 ttacacctctgattgtatatcaagtgtaaacacaatc 26454179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 12223081 - 12223126
Alignment:
Q  275 cttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaa 321  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  12223081 cttgtgtgtttgagcaa-ttgtaatcttgtgtgattatagtgaaaaa 12223126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 4031835 - 4031863
Alignment:
Q  207 ttacacctctaattgtatatcaagtgtaa 235  Q
    |||||||||||||||||||||||||||||    
T  4031835 ttacacctctaattgtatatcaagtgtaa 4031863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 4514645 - 4514729
Alignment:
Q  290 aaattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaaaggaaccggatgtaacctcagattgtggggtgaaca 374  Q
    |||||| |||||||||||||||||||  ||||||   ||| |||| ||| |  || ||||| |||||| ||||||||||||||||    
T  4514645 aaattgcaatcttgtgtgattatagtggaaaaatctcttggaagttcaaggagactggatgcaacctcggattgtggggtgaaca 4514729  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 21633734 - 21633790
Alignment:
Q  89 tttacaagagcaaaatctctgtcaaattcaaaagtcttcaaacacttagaaaaattc 145  Q
    ||||||||||  ||| ||||||||||||||||||  ||| ||||| |||||||||||    
T  21633734 tttacaagagtcaaaactctgtcaaattcaaaagcattcgaacacctagaaaaattc 21633790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 4534 - 4393
Alignment:
Q  105 ctctgtcaaattcaaaagtcttcaaacacttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagtt 204  Q
    |||| ||||||| ||||||   |||||||||||||| ||| ||||||||||  ||||||||||| |||| | ||||   |||||| ||||| ||||||||    
T  4534 ctctctcaaattaaaaagtgcacaaacacttagaaatattagtacaaacttacaatcttagaatttcttaattgtt---aagtcacttgttctttaagtt 4438  T
Q  205 agttacacctctaattgtatatcaagtgtaaacacaatccctttt 249  Q
    |  | ||| | | |||||||||||| ||||||  ||||| |||||    
T  4437 aaatgcacatttgattgtatatcaactgtaaaatcaatctctttt 4393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 4098234 - 4098297
Alignment:
Q  276 ttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaaaggaa 343  Q
    |||||| ||||||||| |||||||||||||||||| |||| |||   |||||||||||||||||||||    
T  4098234 ttgtgtctttgagcaa-ttgtaatcttgtgtgattgtagtgaaa---ttcattgaaagtgcaaaggaa 4098297  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 12870654 - 12870706
Alignment:
Q  291 aattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaaaggaac 344  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||||||||||    
T  12870654 aattgtaatcttgtgtgattatag-taaaaaatctcttgaaagtgcaaaggaac 12870706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 9838 - 9900
Alignment:
Q  275 cttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaa 338  Q
    ||||||| |||||||||| |||||| |||||||||||||| | |||||| ||||| ||||||||    
T  9838 cttgtgtgtttgagcaaactgtaatattgtgtgattatag-tgaaaaatccattggaagtgcaa 9900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 20231 - 20293
Alignment:
Q  275 cttgtgtatttgagcaaattgtaatcttgtgtgattatagttaaaaaattcattgaaagtgcaa 338  Q
    ||||||| |||||||||| |||||| |||||||||||||| | ||||||||||||  |||||||    
T  20231 cttgtgtgtttgagcaaactgtaatattgtgtgattatag-tgaaaaattcattggtagtgcaa 20293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 1755 - 1723
Alignment:
Q  291 aattgtaatcttgtgtgattatagttaaaaaat 323  Q
    ||||||||||||||||||||||||| |||||||    
T  1755 aattgtaatcttgtgtgattatagtgaaaaaat 1723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 16412 - 16303
Alignment:
Q  132 acttagaaaaattcgtacaaactttaaatcttagaatatctttagtgtttagaagtcatttgttatttaagttagttacacctctaattgtatatcaagt 231  Q
    |||||||||||||| | |||||||||||||| | ||| |||| |||||| | |||||| |||   ||||||||  |||||| | | ||||  ||||||||    
T  16412 acttagaaaaattcttccaaactttaaatctcataatttcttaagtgttcataagtcacttgcactttaagtttcttacacatatgattg--tatcaagt 16315  T
Q  232 gtaaacacaatc 243  Q
    || |||||||||    
T  16314 gtcaacacaatc 16303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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