View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_high_11 (Length: 227)
Name: NF2564_high_11
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_high_11 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 32146129 - 32145924
Alignment:
| Q |
22 |
acatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatcttttccctcatttccaagaatactgaacttgaatcttcagagc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32146129 |
acatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatcttctccctcatttccaagaatactgaacttgaatcttcagagc |
32146030 |
T |
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| Q |
122 |
ttcatatccgcataaagcctgagtattgccatcttctcttgagcagtacctatttcttcgaacatcggttattacacttgatgacttgaacgttaccctg |
221 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32146029 |
ttcatatccggataaagcctaagtattgccatcttctcctgagcagtacctatttattcgaacatcggttattacacttgacgacttgaacgttaccctg |
32145930 |
T |
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| Q |
222 |
attacc |
227 |
Q |
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|||||| |
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| T |
32145929 |
attacc |
32145924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 1210 - 1138
Alignment:
| Q |
7 |
atatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct |
79 |
Q |
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| T |
1210 |
atatgtatacctcagacagacattactgcataacataaatcatgtggaatcgttgactcacatgacgacatct |
1138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 21333093 - 21333021
Alignment:
| Q |
7 |
atatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct |
79 |
Q |
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| T |
21333093 |
atatgtatacctcagacagacattactgcgtaacataaatcatgtggaatccttgactcacatgacgacatct |
21333021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 19474 - 19689
Alignment:
| Q |
7 |
atatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct-tttccctcatttccaagaatactgaa |
105 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||| ||| ||| | ||||||| |
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| T |
19474 |
atatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgttt-caaaagtactgaa |
19572 |
T |
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| Q |
106 |
cttgaatcttcagagcttcatatccgcataaagcctgagtattgccatcttctcttgagcagtacctatttcttcgaacatcggttattacacttgatga |
205 |
Q |
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| T |
19573 |
cttgaatcttcagaacttcatattcggataaggctcgagtattgtcatcttctcctgactagtacctctttattcggataccagttattacacttgatga |
19672 |
T |
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| Q |
206 |
cttgaacgttaccctga |
222 |
Q |
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| T |
19673 |
ctcgatcattaccctga |
19689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 14820238 - 14820023
Alignment:
| Q |
7 |
atatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct-tttccctcatttccaagaatactgaa |
105 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||| ||| ||| | ||||||| |
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| T |
14820238 |
atatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgttt-caaaagtactgaa |
14820140 |
T |
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| Q |
106 |
cttgaatcttcagagcttcatatccgcataaagcctgagtattgccatcttctcttgagcagtacctatttcttcgaacatcggttattacacttgatga |
205 |
Q |
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|||||||||||||| |||||||| || |||| || |||||||| ||||||||| ||| ||||||| ||| |||| | | | ||||||||||||||||| |
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| T |
14820139 |
cttgaatcttcagaacttcatattcggataaggctcgagtattgtcatcttctcctgactagtacctctttattcggataccagttattacacttgatga |
14820040 |
T |
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| Q |
206 |
cttgaacgttaccctga |
222 |
Q |
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|| || | ||||||||| |
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| T |
14820039 |
ctcgatcattaccctga |
14820023 |
T |
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