View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_high_2 (Length: 553)
Name: NF2564_high_2
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 249 - 534
Target Start/End: Original strand, 38796272 - 38796556
Alignment:
| Q |
249 |
aaagagagattctgattttgccttcatattgtcctatacagtaatccaatgataatgttaaagataagagttactaaaaattggatgtggaaacaaacaa |
348 |
Q |
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| T |
38796272 |
aaagagagattctgattttgccttcatattgtcctatacagtaatccaatgataatgttaaagataagagttactaaaaattggatgtggaaacaaacaa |
38796371 |
T |
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| Q |
349 |
ggatggggtttatcttaggatcatataaaaaactaaagcaaaagatggaagtacataccacaacttgttttagccccatcgctgtggtcttcatccacat |
448 |
Q |
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| T |
38796372 |
ggatggggattatcttaggatcatataaaaaacaaaagcaaaagatggaagtacataccacaacttg-tttagccccatcgttgtggtcttcatccacat |
38796470 |
T |
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| Q |
449 |
aaacactatgaatcagtagtggcgtggttgattcaatatccttggatgcaaggccatatcgatactagttagaatttttccataag |
534 |
Q |
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| T |
38796471 |
aaacactatgaatcagtagtggcgtggttgattcaatatccttggatgcaaggccatatcgatactagttagaatttttccataag |
38796556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38796054 - 38796275
Alignment:
| Q |
1 |
actaaaaacaaaagtattaccaaactgttatttccaaatgaaagagaaaggacgaaaattgttgctgcactagagaaatgtgaaatcaaagagtgggagc |
100 |
Q |
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| T |
38796054 |
actaaaaacaaaagtattaccaaactgttatttccaaatgaaagagaaaggacgaaaattgttgctgcactagagaaatgtgaaatcaaagagtgggagc |
38796153 |
T |
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| Q |
101 |
annnnnnngttcatgcatcgatgccagttaatttcagttctgtgattaatcaaagagtggatgaatgcgtgaaactctcattttgctaaacattgtcaaa |
200 |
Q |
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| T |
38796154 |
atttttttgttcatgcatcgatgccagttaatttcagttctgtgattaatcaaagagtggatgaatgtgtgaaactctcattttgctaaacattgtcaaa |
38796253 |
T |
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| Q |
201 |
gctagattctccgtcttcaaag |
222 |
Q |
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| T |
38796254 |
gctagattctccgtcttcaaag |
38796275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 180 - 456
Target Start/End: Original strand, 38425048 - 38425319
Alignment:
| Q |
180 |
attttgctaaacattgtcaaagctagattctccgtcttcaaaggcataccgctggaacaatttaagagtaaagagagattctgattttgccttcatattg |
279 |
Q |
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| T |
38425048 |
attttgcaaagcattgtcaaagctagattctccgtcttcaaaggcataccgctggagcaattcgggagtgaagagagaatctgattttgccttcatatca |
38425147 |
T |
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| Q |
280 |
tcctatacagtaatccaatgataatgttaaagataagagttactaaaaattggatgtggaaacaaacaaggatggggtttatcttaggatcatataaaaa |
379 |
Q |
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| T |
38425148 |
tcctatacagtaatccagtg---atgttaaagataagagcttctaaaaattagatgtggaaagaaacaaggatgggtattatcttaggatcttataaaaa |
38425244 |
T |
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| Q |
380 |
actaaagcaaaagatggaagtacataccacaacttgttttagccccatcgctgtggtcttcatccacataaacacta |
456 |
Q |
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| T |
38425245 |
a-taaagcaaatgatggaagtacatacctcaaattg-tttagccccatcgttgaggtcttcatccacagaaacacta |
38425319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 38423649 - 38423719
Alignment:
| Q |
30 |
atttccaaatgaaagagaaaggacgaaaattgttgctgcactagagaaatgtgaaatcaaagagtgggagc |
100 |
Q |
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| T |
38423649 |
atttccaaatgaaagagagaggacgaaaattgttactgcactagagaaatgtgaaatcaaagagtgggagc |
38423719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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