View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2564_high_4 (Length: 487)

Name: NF2564_high_4
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2564_high_4
NF2564_high_4
[»] chr4 (24 HSPs)
chr4 (244-476)||(8363273-8363505)
chr4 (244-476)||(26495122-26495354)
chr4 (244-476)||(56156935-56157167)
chr4 (244-476)||(36244651-36244883)
chr4 (244-434)||(52137426-52137616)
chr4 (242-348)||(36243517-36243623)
chr4 (244-348)||(26496321-26496425)
chr4 (244-348)||(56157508-56157612)
chr4 (235-348)||(20620130-20620243)
chr4 (244-348)||(20625516-20625620)
chr4 (313-454)||(44499890-44500031)
chr4 (244-395)||(35348797-35348948)
chr4 (245-424)||(36846496-36846674)
chr4 (362-421)||(41348354-41348413)
chr4 (357-454)||(46795934-46796032)
chr4 (238-340)||(52138815-52138916)
chr4 (254-454)||(669550-669751)
chr4 (238-349)||(40723221-40723333)
chr4 (244-395)||(39056425-39056576)
chr4 (357-421)||(307747-307811)
chr4 (312-395)||(26631184-26631267)
chr4 (362-413)||(44664277-44664328)
chr4 (255-323)||(28590942-28591010)
chr4 (357-421)||(29665516-29665580)
[»] chr3 (14 HSPs)
chr3 (244-476)||(13621842-13622074)
chr3 (244-476)||(49380838-49381070)
chr3 (279-454)||(14744098-14744273)
chr3 (244-348)||(13620920-13621024)
chr3 (244-341)||(49379701-49379798)
chr3 (356-395)||(8372584-8372623)
chr3 (349-395)||(7921611-7921657)
chr3 (357-395)||(43345429-43345467)
chr3 (357-454)||(48253043-48253141)
chr3 (353-421)||(7271533-7271601)
chr3 (330-421)||(10301757-10301848)
chr3 (357-414)||(53809442-53809499)
chr3 (361-413)||(20486122-20486174)
chr3 (244-348)||(37416450-37416554)
[»] scaffold0114 (1 HSPs)
scaffold0114 (238-476)||(38534-38772)
[»] chr7 (25 HSPs)
chr7 (238-476)||(41329354-41329592)
chr7 (260-454)||(35296724-35296918)
chr7 (244-434)||(32653463-32653653)
chr7 (244-348)||(41328219-41328323)
chr7 (244-348)||(39981317-39981421)
chr7 (244-424)||(666726-666906)
chr7 (245-395)||(43442728-43442878)
chr7 (244-395)||(10955845-10955996)
chr7 (337-395)||(26146672-26146730)
chr7 (244-294)||(32653733-32653783)
chr7 (361-434)||(29589196-29589269)
chr7 (357-454)||(28326298-28326396)
chr7 (313-395)||(44376653-44376735)
chr7 (313-395)||(44385520-44385602)
chr7 (357-454)||(41515106-41515204)
chr7 (356-421)||(17288184-17288249)
chr7 (244-299)||(669449-669504)
chr7 (360-395)||(25532257-25532292)
chr7 (353-454)||(43931773-43931876)
chr7 (238-308)||(26146759-26146829)
chr7 (336-386)||(29861588-29861638)
chr7 (362-434)||(3330810-3330882)
chr7 (361-413)||(18670454-18670506)
chr7 (244-324)||(38539671-38539751)
chr7 (350-414)||(45721715-45721779)
[»] chr1 (18 HSPs)
chr1 (244-486)||(14479389-14479631)
chr1 (244-473)||(28051495-28051723)
chr1 (244-434)||(51446769-51446959)
chr1 (244-348)||(14478266-14478370)
chr1 (244-348)||(51445590-51445694)
chr1 (258-421)||(40533543-40533706)
chr1 (244-414)||(12667221-12667391)
chr1 (244-348)||(28050321-28050425)
chr1 (258-340)||(40634711-40634793)
chr1 (244-395)||(48528862-48529013)
chr1 (361-421)||(24516448-24516508)
chr1 (361-421)||(40110594-40110654)
chr1 (350-421)||(26803158-26803229)
chr1 (342-411)||(14429849-14429918)
chr1 (244-324)||(15746802-15746882)
chr1 (361-413)||(33941431-33941483)
chr1 (244-324)||(48527534-48527614)
chr1 (357-393)||(50679791-50679827)
[»] chr2 (18 HSPs)
chr2 (244-476)||(28610022-28610254)
chr2 (244-454)||(4919827-4920037)
chr2 (283-454)||(45699568-45699739)
chr2 (258-454)||(19397544-19397741)
chr2 (244-344)||(4921074-4921174)
chr2 (244-348)||(28611264-28611368)
chr2 (245-356)||(8321247-8321358)
chr2 (242-346)||(19398814-19398918)
chr2 (337-395)||(1147842-1147900)
chr2 (267-326)||(45699523-45699582)
chr2 (244-324)||(2276281-2276361)
chr2 (334-374)||(28544941-28544981)
chr2 (244-324)||(34147136-34147216)
chr2 (358-421)||(3533568-3533631)
chr2 (339-392)||(9474020-9474073)
chr2 (255-312)||(34512825-34512882)
chr2 (354-414)||(16289887-16289947)
chr2 (244-324)||(34148396-34148476)
[»] chr5 (26 HSPs)
chr5 (244-476)||(11796569-11796800)
chr5 (235-348)||(23325903-23326016)
chr5 (244-348)||(23333979-23334083)
chr5 (245-454)||(10736843-10737053)
chr5 (244-348)||(11797545-11797649)
chr5 (254-392)||(10978247-10978385)
chr5 (330-414)||(9219262-9219346)
chr5 (357-455)||(8188107-8188206)
chr5 (353-395)||(1273195-1273237)
chr5 (315-421)||(4124828-4124934)
chr5 (278-348)||(13520794-13520864)
chr5 (244-348)||(41144530-41144634)
chr5 (312-414)||(13519540-13519647)
chr5 (361-423)||(5975870-5975932)
chr5 (357-395)||(15857586-15857624)
chr5 (241-349)||(8521252-8521360)
chr5 (244-348)||(10735763-10735867)
chr5 (357-393)||(18695617-18695653)
chr5 (357-392)||(5384317-5384352)
chr5 (353-395)||(22812354-22812397)
chr5 (245-324)||(32757826-32757905)
chr5 (357-394)||(224559-224596)
chr5 (320-421)||(35047495-35047595)
chr5 (244-312)||(8523794-8523862)
chr5 (357-393)||(21389113-21389149)
chr5 (244-324)||(32759084-32759164)
[»] chr8 (18 HSPs)
chr8 (17-189)||(45298855-45299033)
chr8 (244-434)||(9853567-9853757)
chr8 (262-454)||(42793717-42793910)
chr8 (244-348)||(9854891-9854995)
chr8 (258-394)||(38697170-38697306)
chr8 (330-454)||(24191463-24191587)
chr8 (330-421)||(43203219-43203310)
chr8 (336-454)||(45395924-45396042)
chr8 (361-421)||(22621076-22621136)
chr8 (312-395)||(31844436-31844519)
chr8 (235-324)||(38696299-38696388)
chr8 (244-299)||(28291295-28291350)
chr8 (350-421)||(39516439-39516510)
chr8 (357-395)||(16362529-16362567)
chr8 (239-324)||(28291401-28291486)
chr8 (358-395)||(34616245-34616282)
chr8 (351-395)||(36757188-36757232)
chr8 (256-348)||(38697880-38697972)
[»] scaffold0219 (2 HSPs)
scaffold0219 (244-454)||(6895-7105)
scaffold0219 (244-356)||(8194-8306)
[»] chr6 (5 HSPs)
chr6 (244-348)||(11722786-11722890)
chr6 (274-348)||(21777496-21777570)
chr6 (343-390)||(138176-138223)
chr6 (343-390)||(146197-146244)
chr6 (353-454)||(18242215-18242317)
[»] scaffold0011 (2 HSPs)
scaffold0011 (244-324)||(128627-128707)
scaffold0011 (244-324)||(127433-127513)
[»] scaffold2071 (1 HSPs)
scaffold2071 (244-324)||(717-797)
[»] scaffold1251 (1 HSPs)
scaffold1251 (244-324)||(1121-1201)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 244 - 476
Target Start/End: Complemental strand, 8363505 - 8363273
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||    
T  8363505 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttggttttgctccgttag 8363406  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||      
T  8363405 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcggt 8363306  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    |||||||||||||||||| ||||||||||||||    
T  8363305 acctaatttttccagcactatcatcttctctct 8363273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 244 - 476
Target Start/End: Original strand, 26495122 - 26495354
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  26495122 cttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccccttggttttgctccgtcag 26495221  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||||||| |    
T  26495222 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtctgttatacctatagtgagccatcggc 26495321  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    |||||||||||||||||| ||||||||||||||    
T  26495322 acctaatttttccagcactatcatcttctctct 26495354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 244 - 476
Target Start/End: Original strand, 56156935 - 56157167
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||||     
T  56156935 cttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgctccgtcaa 56157034  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||    
T  56157035 tcaaattgaccccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttggttgcatgtccattatacctatagtgagccgtcgac 56157134  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    ||||| |||||||||| | || |||||||||||    
T  56157135 acctagtttttccagcgctattatcttctctct 56157167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 244 - 476
Target Start/End: Complemental strand, 36244883 - 36244651
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||    
T  36244883 cttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccccttgattttgctccgtcag 36244784  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||| |    
T  36244783 tcaaattgatcccctccgttagttttttaatgtttaaaatgtttgatatgatattagccgtttgattgcatgtccattatacctatagtcagccgtcggc 36244684  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    |||||||||||||||| | ||||||||||||||    
T  36244683 acctaatttttccagctctatcatcttctctct 36244651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 434
Target Start/End: Original strand, 52137426 - 52137616
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||||  |||||||| ||||||| |    
T  52137426 cttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcctcttggttttactccgtcgg 52137525  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 434  Q
    ||||||| |||  |||||||||||||| ||||| |||| ||||||||||||| |||  ||||||||||||| |||||||||| ||||||||    
T  52137526 tcaaattcatcatctccgttagtttttcaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacttatagtga 52137616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 36243517 - 36243623
Alignment:
Q  242 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||     
T  36243517 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttagttttgctctgtt 36243616  T
Q  342 agtcaaa 348  Q
    |||||||    
T  36243617 agtcaaa 36243623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 26496425 - 26496321
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||  || | |||||||||||||    
T  26496425 cttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcctcttaggtttgctccgtcag 26496326  T
Q  344 tcaaa 348  Q
    |||||    
T  26496325 tcaaa 26496321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 56157612 - 56157508
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||   ||||||| ||||||||||||||||||||| ||||||||||||| | ||    
T  56157612 cttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccctttggttttgctccattag 56157513  T
Q  344 tcaaa 348  Q
    |||||    
T  56157512 tcaaa 56157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 20620130 - 20620243
Alignment:
Q  235 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttg 334  Q
    |||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||| ||  ||||  |||||||||    
T  20620130 tttttttggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttg 20620229  T
Q  335 ctccgtcagtcaaa 348  Q
     |||||||||||||    
T  20620230 gtccgtcagtcaaa 20620243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 20625620 - 20625516
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||| ||| ||  ||||  ||||||||| ||||||||    
T  20625620 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaacttacagttgagtcctcttggttttggtccgtcag 20625521  T
Q  344 tcaaa 348  Q
    |||||    
T  20625520 tcaaa 20625516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 454
Target Start/End: Complemental strand, 44500031 - 44499890
Alignment:
Q  313 cattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgc 412  Q
    |||||||||||| |   ||||||||||| |||||||||||||| |||||||||||| ||||||| || | |||||||| |||| |||  |||||||||||    
T  44500031 cattttggtcccttaacttttgctccgttagtcaaattgatccactccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgc 44499932  T
Q  413 atatccattatacctatagtgagccatcgacacctaattttt 454  Q
    || |||||| || ||||||||| || ||  ||||||||||||    
T  44499931 atgtccattgtatctatagtgaaccgtcagcacctaattttt 44499890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 35348797 - 35348948
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||||||| |||| || |||||   || |||| |||||  | |||||||| ||||||    
T  35348797 cttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtcag 35348896  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||| ||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  35348897 tcaatttagtcccctccgttagctttttaatgtctaaaatttttgatttgat 35348948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 424
Target Start/End: Complemental strand, 36846674 - 36846496
Alignment:
Q  245 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 344  Q
    |||||||||| ||||| ||||||| |||||    |||| ||||||||||| |||| |  |||||   |||||||||||||  | ||||||||||||  ||    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgt 36846575  T
Q  345 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattata 424  Q
    ||| ||| |||| ||||||||| ||||||||| |||| |||||||| |||| |||  | ||||||||||| |||||||||    
T  36846574 caatttggtcccttccgttagt-ttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattata 36846496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 41348354 - 41348413
Alignment:
Q  362 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    ||||||||||||||| |||||||||||||||||| ||| || ||||||||||| ||||||    
T  41348354 ttagttttttaatgtataaaatttttgatatgattttaatcatttgattgcatgtccatt 41348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 454
Target Start/End: Complemental strand, 46796032 - 46795934
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 454  Q
    |||||||||||||||||||| |||| ||||||||||||| |||  | ||||||||||| |||||| ||  | ||||||| || ||| ||||||||||||    
T  46796032 ctccgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaattttt 46795934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 340
Target Start/End: Complemental strand, 52138916 - 52138815
Alignment:
Q  238 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctc 337  Q
    ||||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||| ||  ||||||| ||| || | |||||||||||  ||||||||||||    
T  52138916 tattggcttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaagac-cccattttggtcctcttggttttgctc 52138818  T
Q  338 cgt 340  Q
    |||    
T  52138817 cgt 52138815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 454
Target Start/End: Complemental strand, 669751 - 669550
Alignment:
Q  254 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgct-ccgtcagtcaaattga 352  Q
    |||||||||||| || ||||| | | ||| ||||||||||| |||| | ||||||||||||||||||||||     | | | | |||||||||||||||     
T  669751 catttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtccctcaattataggtcccgtcagtcaaattgg 669652  T
Q  353 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattt 452  Q
    ||| |||| ||| | ||||||||| | ||  | || ||| ||| |||  ||||||||||||| ||||||||| |||  ||||||||||  ||| ||||||    
T  669651 tccactccattaatgttttaatgtctgaatatatttatacgattttaaccgtttgattgcatgtccattatatctacggtgagccatcatcacttaattt 669552  T
Q  453 tt 454  Q
    ||    
T  669551 tt 669550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 40723221 - 40723333
Alignment:
Q  238 tattgacttaattggacatttggtcccctaaataattatg-agtttacattttggtcctataaattataaaactcacattttggtcccattggttttgct 336  Q
    ||||| |||||| || ||||||||||||||| ||||| || | ||| ||||||||||| |||| | ||||||||||  |||||||||| | |||||  ||    
T  40723221 tattggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtcccttaggtttatct 40723320  T
Q  337 ccgtcagtcaaat 349  Q
    ||||| |||||||    
T  40723321 ccgtcggtcaaat 40723333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 39056425 - 39056576
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||||||  |||| || |||||   || |||| |||||  | |||||||||||| ||    
T  39056425 cttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgctccgttag 39056524  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||| ||  | ||| ||||||| |||||||||| ||||||||||||| ||||    
T  39056525 tcaatttagttcccaccgttagctttttaatgtctaaaatttttgatttgat 39056576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 307811 - 307747
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||  | | ||||||||| ||||||    
T  307811 ctccgttggttttttaatgtttaaattttttgatatgattttaaccatatgattgcatgtccatt 307747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 395
Target Start/End: Complemental strand, 26631267 - 26631184
Alignment:
Q  312 acattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||| ||  | |||||||||||| |||||| ||| ||||||||||| ||  |||||||| |||| |||||||| ||||    
T  26631267 acattttggttcctcttgttttgctccgttagtcaatttggtcccctccgtttgtcctttaatgtctaaattttttgatttgat 26631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 44664328 - 44664277
Alignment:
Q  362 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 413  Q
    ||||||||||||||| ||| |||||| |||||||  ||||||||||||||||    
T  44664328 ttagttttttaatgtataatatttttaatatgattatagtcgtttgattgca 44664277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 28591010 - 28590942
Alignment:
Q  255 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 323  Q
    |||||||||| |||||||||   || || ||||||||||| |||||| ||||||||||  |||||||||    
T  28591010 atttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcc 28590942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 29665580 - 29665516
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||||| ||||||||||| |||| |||||||| |||| |||  | ||||||||||| ||||||    
T  29665580 ctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccatt 29665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 244 - 476
Target Start/End: Complemental strand, 13622074 - 13621842
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||    
T  13622074 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttgcttcgtcag 13621975  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |    
T  13621974 tcaaattgatcccctcagttagttttttaatatttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccatcggc 13621875  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    |||||||||||||||||| ||||||||||||||    
T  13621874 acctaatttttccagcactatcatcttctctct 13621842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 244 - 476
Target Start/End: Complemental strand, 49381070 - 49380838
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||    
T  49381070 cttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtacccttggttttgctccgtcag 49380971  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |    
T  49380970 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagctatcggc 49380871  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    |||||||||||||||||| ||||||||||||||    
T  49380870 acctaatttttccagcactatcatcttctctct 49380838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 279 - 454
Target Start/End: Original strand, 14744098 - 14744273
Alignment:
Q  279 gtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgttt 378  Q
    |||||||||||||||  ||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||  |||||||| ||||||||||| |    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggtttcattggttttgctccgttagtcaaattgatcatctccgttaattttttaatgtct 14744197  T
Q  379 aaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattttt 454  Q
    ||| ||||||||||||| |||  || |||||||||| |||||||||| |||||||| |||||  ||||||||||||    
T  14744198 aaattttttgatatgattttaaccgattgattgcatgtccattatacatatagtgaaccatcagcacctaattttt 14744273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 13620920 - 13621024
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  13620920 cttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcctcttggttttgctccgtcag 13621019  T
Q  344 tcaaa 348  Q
    |||||    
T  13621020 tcaaa 13621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 49379701 - 49379798
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtc 341  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||| || |  ||||||||||||||||    
T  49379701 cttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacattttagttctcttggttttgctccgtc 49379798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 8372623 - 8372584
Alignment:
Q  356 cctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  8372623 cctccgttagttttttaatgtttaatatttttgatatgat 8372584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 7921657 - 7921611
Alignment:
Q  349 ttgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  7921657 ttgatcctctccgttagttttttaatgtctaatatttttgatatgat 7921611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 43345429 - 43345467
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  43345429 ctccgttagttttttaatgtttaatatttttgatatgat 43345467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 454
Target Start/End: Original strand, 48253043 - 48253141
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 454  Q
    |||||||||||||||||||| |||| |||||||| |||| |||  | ||||||||||| |||||| || || ||||||| |  || |||||||||||||    
T  48253043 ctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacacctaattttt 48253141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 7271601 - 7271533
Alignment:
Q  353 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||||||||||||||||||||| |||| |||||||| | || |||  | ||||||||||| ||||||    
T  7271601 tcccctccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccatt 7271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 10301848 - 10301757
Alignment:
Q  330 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    ||||||||||| |||||| ||| |  |||| |||||||||||||||| |||| |||||||| |||| |||  | |||||||| || ||||||    
T  10301848 ttttgctccgttagtcaatttggtgtcctctgttagttttttaatgtctaaattttttgatttgattttaaccatttgattgaatgtccatt 10301757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 53809499 - 53809442
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 414  Q
    |||||||||||||||||||| |||| |||||||||| || |||  | |||||||||||    
T  53809499 ctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcat 53809442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 20486122 - 20486174
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 413  Q
    |||||||||||||||| ||||| |||| ||||||| ||| || ||||||||||    
T  20486122 gttagttttttaatgtctaaaacttttaatatgattttaatcatttgattgca 20486174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 37416554 - 37416450
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||| | ||||||||||||| |||||    |||| ||||||||| | |||| | ||||||   |||||||||||||  | |||||||||||| ||    
T  37416554 cttaattggccttttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgttag 37416455  T
Q  344 tcaaa 348  Q
    |||||    
T  37416454 tcaaa 37416450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 238 - 476
Target Start/End: Original strand, 38534 - 38772
Alignment:
Q  238 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctc 337  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||    
T  38534 tattggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctc 38633  T
Q  338 cgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagcc 437  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38634 cgtcagtcaaattgatcccctccgttagttttttaatgattaaaattttttatatgatattagccgtttgattgcatgtccattatacctatagtgagcc 38733  T
Q  438 atcgacacctaatttttccagcaccatcatcttctctct 476  Q
     ||| ||||||||||||||||||| ||||||||||||||    
T  38734 gtcggcacctaatttttccagcactatcatcttctctct 38772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 9e-99; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 238 - 476
Target Start/End: Complemental strand, 41329592 - 41329354
Alignment:
Q  238 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctc 337  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||    
T  41329592 tattggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttactc 41329493  T
Q  338 cgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagcc 437  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||    
T  41329492 cgtcagtcaaattgatcccctccgttagatttttaatgtttaaattttttgatgtgatattaaccgtttgattgcatgtccattatacctatagtgagcc 41329393  T
Q  438 atcgacacctaatttttccagcaccatcatcttctctct 476  Q
    |||| |||||||||||| |||||| ||||||||||||||    
T  41329392 atcggcacctaattttttcagcactatcatcttctctct 41329354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 260 - 454
Target Start/End: Complemental strand, 35296918 - 35296724
Alignment:
Q  260 gtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctc 359  Q
    |||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||  |||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatcatctc 35296819  T
Q  360 cgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattttt 454  Q
    ||||| ||||||||||| |||| ||||||||||||| |||  ||||||||||||| |||||||||| |||| ||||||| |  ||||||||||||    
T  35296818 cgttaattttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacatataatgagccaccagcacctaattttt 35296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 434
Target Start/End: Original strand, 32653463 - 32653653
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| |||| ||||| |||||||||||| |||||||||||||||  ||||||| |||||||||||||| |||||| |||||||||||||||| |    
T  32653463 cttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtccccttggttttgctccgtcgg 32653562  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 434  Q
    ||| | || |||| ||||||||||||||||||  ||||||||||||||| || |||  ||||||||||||| ||||||||||||| |||||    
T  32653563 tcagaatggtcccatccgttagttttttaatgactaaaatttttgatatcattttaaccgtttgattgcatgtccattatacctacagtga 32653653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 41328219 - 41328323
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| || ||||     
T  41328219 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatcagtcaa 41328318  T
Q  344 tcaaa 348  Q
    |||||    
T  41328319 tcaaa 41328323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 39981317 - 39981421
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||| ||||| ||||||||||||||  ||||||||||| ||||||    
T  39981317 cttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtccttttggttttgcttcgtcag 39981416  T
Q  344 tcaaa 348  Q
    |||||    
T  39981417 tcaaa 39981421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 424
Target Start/End: Original strand, 666726 - 666906
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||  ||| ||||||||||||||||| ||||| ||||||| ||  |||| | |||||| | | |||| ||||||  | |||||||||||| ||    
T  666726 cttaattggatttttagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtccctcttgttttgctccgttag 666825  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattata 424  Q
    |||| ||| |||||||||||||| |||||||||  ||| |||||||| |||| |||  | ||| ||||||| || ||||||    
T  666826 tcaatttggtcccctccgttagtattttaatgtcgaaattttttgatttgattttaaccatttaattgcatgtctattata 666906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 395
Target Start/End: Complemental strand, 43442878 - 43442728
Alignment:
Q  245 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 344  Q
    ||||||| || ||||||||||||| |||||    |||| ||| ||||||| |||| |  |||||   |||||||||||||  | |||||||||||| |||    
T  43442878 ttaattgaacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagt 43442779  T
Q  345 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    ||| ||| |||||||||||||| ||||||||| |||| |||||||| ||||    
T  43442778 caatttggtcccctccgttagtcttttaatgtctaaattttttgatttgat 43442728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 10955845 - 10955996
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||| | | |||| ||||||||   || |||| |||||  | |||||||||||| ||    
T  10955845 cttaattggacttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgttag 10955944  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||| ||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  10955945 tcaatttagtcccctccgttagatttttaatgtctaaaatttttgatttgat 10955996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 26146730 - 26146672
Alignment:
Q  337 ccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  26146730 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgat 26146672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 32653783 - 32653733
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcc 294  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32653783 cttaattggacatttggtcccctaaataattatgtatttacattttggtcc 32653733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 29589269 - 29589196
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 434  Q
    |||||||||||||||||||||||||||||| |||| |||  | ||||||| |||||||||||||  ||||||||    
T  29589269 gttagttttttaatgtttaaaatttttgatttgattttaaccatttgatttcatatccattatatttatagtga 29589196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 454
Target Start/End: Complemental strand, 28326396 - 28326298
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 454  Q
    |||||||||||||||||||| |||| ||||| ||||||| |||  | ||||||||||| |||||||||  | ||||||| || ||| ||||||||||||    
T  28326396 ctccgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaattttt 28326298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 44376735 - 44376653
Alignment:
Q  313 cattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||| |   ||||||||| | ||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||    
T  44376735 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgat 44376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 44385602 - 44385520
Alignment:
Q  313 cattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||| |   ||||||||| | ||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||    
T  44385602 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgat 44385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 454
Target Start/End: Original strand, 41515106 - 41515204
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 454  Q
    |||||||| ||||||||||| |||| ||||| ||||||| |||  | ||||||||||| |||||||||  | ||||||| || ||| ||||||||||||    
T  41515106 ctccgttaattttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaattttt 41515204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 17288249 - 17288184
Alignment:
Q  356 cctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||    ||||||||||| ||||||    
T  17288249 cctccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccatt 17288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 669504 - 669449
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 299  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  669504 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 669449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 25532257 - 25532292
Alignment:
Q  360 cgttagttttttaatgtttaaaatttttgatatgat 395  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25532257 cgttagttttttaatgtttaatatttttgatatgat 25532292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 43931876 - 43931773
Alignment:
Q  353 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgc-atatccattatac-ctatagtgagccatcgacacctaat 450  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| | | || || |||||| | ||||||||||| | ||||||| |||||  ||| ||||    
T  43931876 tcccctccgttagttttttaatgtctaacatttttgaaatgatttgaatcattcgattgcaagatccattatacacaatagtgaaccatcaccacataat 43931777  T
Q  451 tttt 454  Q
    ||||    
T  43931776 tttt 43931773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 26146829 - 26146759
Alignment:
Q  238 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaa 308  Q
    ||||| ||||||||||| ||||||||||||| |||||    |||| ||||||| ||||||||||| |||||    
T  26146829 tattggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaa 26146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 29861588 - 29861638
Alignment:
Q  336 tccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttt 386  Q
    ||||||||||||||||||||  |||||||||||||| |||| ||| |||||    
T  29861588 tccgtcagtcaaattgatccattccgttagtttttttatgtctaatatttt 29861638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 3330810 - 3330882
Alignment:
Q  362 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 434  Q
    ||||||| ||||||| |||| |||||||| |||| |||  ||||||||||||| | |||| || |||||||||    
T  3330810 ttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgttcattgtatctatagtga 3330882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 18670506 - 18670454
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 413  Q
    |||||||||||||||| ||| |||||| |||||||  ||| ||||||||||||    
T  18670506 gttagttttttaatgtataatatttttaatatgattatagccgtttgattgca 18670454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 38539671 - 38539751
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||| |||| ||| |||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||    
T  38539671 cttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtccc 38539751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 45721779 - 45721715
Alignment:
Q  350 tgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 414  Q
    |||||| |||||||||||||||||||| |||| ||||| || |||| |||  | |||||||||||    
T  45721779 tgatcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcat 45721715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 9e-99; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 244 - 486
Target Start/End: Complemental strand, 14479631 - 14479389
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  14479631 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctccatcag 14479532  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||  |    
T  14479531 tcaaattgatcccctccgttagttttttaatgattaaaatttttgatattatattagccgtttgattgcatgtccattatacctatagtgagccgtcagc 14479432  T
Q  444 acctaatttttccagcaccatcatcttctctctgctccttcac 486  Q
    ||||||||||||||| || |||||||||||||| |||| ||||    
T  14479431 acctaatttttccaggactatcatcttctctcttctccctcac 14479389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 244 - 473
Target Start/End: Complemental strand, 28051723 - 28051495
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||| ||    
T  28051723 cttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttgattttgctccgttag 28051624  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    |||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| ||| |    
T  28051623 tcaaattgattca-tccgttaattttttaatgtttaaaatttttgatatgatattagctgtttgattgcatgtccattatacctatagtgagccgtcggc 28051525  T
Q  444 acctaatttttccagcaccatcatcttctc 473  Q
    |||||||||||||||||| |||||||||||    
T  28051524 acctaatttttccagcactatcatcttctc 28051495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 244 - 434
Target Start/End: Complemental strand, 51446959 - 51446769
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||  ||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  51446959 cttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtcag 51446860  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 434  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||   |||||||||||| |||||||||||||| ||||    
T  51446859 tcaaattgatcccctccgttagttttttaatatctaaattttttgatatgattttaactgtttgattgcatgtccattatacctattgtga 51446769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 14478266 - 14478370
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  14478266 cttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctctgggttttgctccgtcag 14478365  T
Q  344 tcaaa 348  Q
    |||||    
T  14478366 tcaaa 14478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 51445590 - 51445694
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| || |||||    
T  51445590 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatctgtcag 51445689  T
Q  344 tcaaa 348  Q
    |||||    
T  51445690 tcaaa 51445694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 421
Target Start/End: Complemental strand, 40533706 - 40533543
Alignment:
Q  258 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccc 357  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| ||||||  |||||||||||||  | | |||||||||| |||||||  | |||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccc 40533607  T
Q  358 tccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    ||||||| ||||||||||| ||||| |||||||||||| |||  | || |||||||| ||||||    
T  40533606 tccgttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccatt 40533543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 414
Target Start/End: Complemental strand, 12667391 - 12667221
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||  ||| |||| |||||||||||| ||||| ||||||||||||| || |  ||||| | |||||| ||||||  | |||||||||||| ||    
T  12667391 cttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgttag 12667292  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 414  Q
    |||| ||| ||||||||||||||||||||||||  ||| |||||||| |||| ||| || |||||||||||    
T  12667291 tcaacttggtcccctccgttagttttttaatgtcgaaattttttgatttgattttaatcatttgattgcat 12667221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 28050321 - 28050425
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||  |||||||||||||| ||| ||||||||||| ||    
T  28050321 cttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgttag 28050420  T
Q  344 tcaaa 348  Q
    |||||    
T  28050421 tcaaa 28050425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 40634793 - 40634711
Alignment:
Q  258 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgt 340  Q
    |||||||||||||||||   ||||||||||||| ||| |||||| |||||||||||||||| ||||| ||| |||||||||||    
T  40634793 tggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtccccttgattttgctccgt 40634711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 395
Target Start/End: Complemental strand, 48529013 - 48528862
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||| |||||||||| || |||||    |||||||||||||||| |||| |  |||||   ||||||| |||||  |  |||| |||||| ||    
T  48529013 cttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgttag 48528914  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||| ||| |||| ||||||||||||||||| | ||||| ||||||| ||||    
T  48528913 tcaatttggtcccatccgttagttttttaatatctaaaacttttgatttgat 48528862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 24516448 - 24516508
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||||||||||||| ||||||| |||||||||| |||  | ||||||||||| ||||||    
T  24516448 gttagttttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccatt 24516508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 40110654 - 40110594
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||||||||||||| ||||||| |||||||||| |||  | ||||||||||| ||||||    
T  40110654 gttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccatt 40110594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 26803229 - 26803158
Alignment:
Q  350 tgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||| ||| |||||| ||||||||| ||||||| |||||||||| |||  | ||||||||||| ||||||    
T  26803229 tgatcctctctgttagtattttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccatt 26803158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 14429849 - 14429918
Alignment:
Q  342 agtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattg 411  Q
    |||||||||||||  ||| |||| ||||||||||| ||| ||| |||||||||| |||  ||||||||||    
T  14429849 agtcaaattgatcatctctgttatttttttaatgtctaatattcttgatatgattttaaccgtttgattg 14429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 15746882 - 15746802
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || ||||||||||||||| |||||   | ||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  15746882 cttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtccc 15746802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 33941431 - 33941483
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 413  Q
    |||||||||||||||| ||| |||||| ||||||| |||  ||||||||||||    
T  33941431 gttagttttttaatgtctaacatttttaatatgattttaaccgtttgattgca 33941483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 48527534 - 48527614
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    ||||||||||  ||||||||||||| |||||    |||||||||||||||| |||| |  ||||| | |||||||||||||    
T  48527534 cttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccc 48527614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 50679827 - 50679791
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatg 393  Q
    |||||||||||||||||||| |||| |||||||||||    
T  50679827 ctccgttagttttttaatgtctaaattttttgatatg 50679791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 244 - 476
Target Start/End: Original strand, 28610022 - 28610254
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  28610022 cttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccgtcag 28610121  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| ||| |    
T  28610122 tcaaattgatcccatccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgttcattatacctatagtgagccgtcggc 28610221  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    |||||||||||||||||| |||||||| |||||    
T  28610222 acctaatttttccagcactatcatcttatctct 28610254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 244 - 454
Target Start/End: Original strand, 4919827 - 4920037
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  4919827 cttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtcag 4919926  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||||||||||| ||||||||||||  | |||| ||||||||||||| |||  ||||||||||||| ||||||||||||||||||| |||||  |    
T  4919927 tcaaattgatcccctccattagttttttaacatctaaattttttgatatgattttaaccgtttgattgcatgtccattatacctatagtgaaccatcagc 4920026  T
Q  444 acctaattttt 454  Q
    | |||||||||    
T  4920027 atctaattttt 4920037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 283 - 454
Target Start/End: Original strand, 45699568 - 45699739
Alignment:
Q  283 acattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaa 382  Q
    |||||||||| | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||     
T  45699568 acattttggttccataaattgtaaaactcacattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaat 45699667  T
Q  383 tttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattttt 454  Q
    ||||||||||||| |||   |||||||||||| ||||| ||||||||||||| || || ||| |||||||||    
T  45699668 tttttgatatgattttaactgtttgattgcatgtccatcatacctatagtgaaccgtcaacatctaattttt 45699739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 454
Target Start/End: Original strand, 19397544 - 19397741
Alignment:
Q  258 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccc 357  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||  | |||||||||||| ||||| |  | ||||     
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtcataaaggtccct 19397643  T
Q  358 tccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 454  Q
    ||||||| ||||||||||| ||||| ||||||||| || |||  | || |||||||| |||||| ||  | ||||||| |  ||||||||||||||||    
T  19397644 tccgttatttttttaatgtctaaaacttttgatataattttaaccattggattgcatgtccattgtaattaatagtgaactgtcgacacctaattttt 19397741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 4921174 - 4921074
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  4921174 cttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcctcttggttttgctctgtcag 4921075  T
Q  344 t 344  Q
    |    
T  4921074 t 4921074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 28611368 - 28611264
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||  ||||||||||||||||||    
T  28611368 cttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtccttttggttttgctccgtcag 28611269  T
Q  344 tcaaa 348  Q
    |||||    
T  28611268 tcaaa 28611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 8321358 - 8321247
Alignment:
Q  245 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 344  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||| ||||| ||  |||||||||||| ||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccctttaattttgctccgtcggt 8321259  T
Q  345 caaattgatccc 356  Q
    ||||||||||||    
T  8321258 caaattgatccc 8321247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 19398918 - 19398814
Alignment:
Q  242 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtc 341  Q
    ||||||||||| | |||||| |||||||||||||   |||||||||||||||| ||||||| ||||||  |||||||||||||  | ||||||||||||     
T  19398918 gacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgttttgctccgtt 19398819  T
Q  342 agtca 346  Q
    |||||    
T  19398818 agtca 19398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 1147842 - 1147900
Alignment:
Q  337 ccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  1147842 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgat 1147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 45699523 - 45699582
Alignment:
Q  267 aaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccat 326  Q
    ||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||| ||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggttccat 45699582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 2276281 - 2276361
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| ||||||||| | ||||||||||  ||||||||||    
T  2276281 cttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtccc 2276361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 28544981 - 28544941
Alignment:
Q  334 gctccgtcagtcaaattgatcccctccgttagttttttaat 374  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  28544981 gctccgtcagtcaaattgatcctctacgttagttttttaat 28544941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 34147136 - 34147216
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||||||||  |||||||| | ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  34147136 cttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccc 34147216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 3533631 - 3533568
Alignment:
Q  358 tccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    ||||||||| |||||||||||||  ||||||||||||| | |  |||||||||||| |||||||    
T  3533631 tccgttagtattttaatgtttaagttttttgatatgatttcaaccgtttgattgcagatccatt 3533568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 9474073 - 9474020
Alignment:
Q  339 gtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 392  Q
    |||||||||| || |||||||| |||  |||||||||||||| |||||||||||    
T  9474073 gtcagtcaaagtggtcccctccattaaatttttaatgtttaatatttttgatat 9474020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 34512825 - 34512882
Alignment:
Q  255 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 312  Q
    |||||||||||||| ||||||  ||||| ||||||||||| |||| | ||||||||||    
T  34512825 atttggtcccctaattaattaccagttttcattttggtcccataattaataaaactca 34512882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 16289887 - 16289947
Alignment:
Q  354 cccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 414  Q
    ||||||| ||||||||||||||| |||||||||| || |||| ||| || |||||| ||||    
T  16289887 cccctccattagttttttaatgtctaaaattttttatttgattttactcatttgatcgcat 16289947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 34148476 - 34148396
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  ||||||||||    
T  34148476 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccc 34148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 244 - 476
Target Start/End: Original strand, 11796569 - 11796800
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| ||||    
T  11796569 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccc-ttggttttgctccctcag 11796667  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 443  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |    
T  11796668 tcaaattgatcccatccgctagttttttaatgtttaaaacttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccgtcggc 11796767  T
Q  444 acctaatttttccagcaccatcatcttctctct 476  Q
    | |||||||||||||||| ||||||||||||||    
T  11796768 atctaatttttccagcactatcatcttctctct 11796800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 23325903 - 23326016
Alignment:
Q  235 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttg 334  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||| ||  ||||  |||||||||    
T  23325903 tttttttggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttg 23326002  T
Q  335 ctccgtcagtcaaa 348  Q
     |||||||||||||    
T  23326003 gtccgtcagtcaaa 23326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 23334083 - 23333979
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||| ||| ||  ||||  ||||||||| ||||||||    
T  23334083 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactaacagttgagtcctcttggttttggtccgtcag 23333984  T
Q  344 tcaaa 348  Q
    |||||    
T  23333983 tcaaa 23333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 454
Target Start/End: Complemental strand, 10737053 - 10736843
Alignment:
Q  245 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 344  Q
    |||||||||| ||||||||||||| |||||    |||| ||||||||||| |||| |  |||||   |||||||||||||  | |||||||||||| | |    
T  10737053 ttaattggacttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 10736954  T
Q  345 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgac 443  Q
    ||| ||| ||||||||||||  |||||||||| ||||||||||||| |||| |||  | |||||||| || |||||| || || ||||||| || || ||    
T  10736953 caatttggtcccctccgttaactttttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaac 10736854  T
Q  444 acctaattttt 454  Q
    || ||||||||    
T  10736853 acttaattttt 10736843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 11797649 - 11797545
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |  |||||   |||||||||||||  | ||||| |||||| ||    
T  11797649 cttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttag 11797550  T
Q  344 tcaaa 348  Q
    |||||    
T  11797549 tcaaa 11797545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 392
Target Start/End: Complemental strand, 10978385 - 10978247
Alignment:
Q  254 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgc-tccgtcagtcaaattga 352  Q
    ||||||||||||||| |||||   | ||| |||||||||||||||||| ||||||| ||| ||| |||||| |   || | | ||||||||||||| |||    
T  10978385 catttggtcccctaattaatttccaattttcattttggtcctataaataataaaacccacgtttcggtccc-tcaattatacgtccgtcagtcaaagtga 10978287  T
Q  353 tcccctccgttagttttttaatgtttaaaatttttgatat 392  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  10978286 tcccctccgttagatttttaatgtttaatatttttgatat 10978247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 330 - 414
Target Start/End: Original strand, 9219262 - 9219346
Alignment:
Q  330 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 414  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||| || |||| |||  |||||||||||||    
T  9219262 ttttgctccattagtcaatttgatcccctccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcat 9219346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 455
Target Start/End: Complemental strand, 8188206 - 8188107
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaatttttc 455  Q
    |||||||||||||||||||| |||||||| ||||||||| |||  | ||||||||||| |||||||||  | || |||| ||||| ||||||||||||||    
T  8188206 ctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaatttttc 8188107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 1273195 - 1273237
Alignment:
Q  353 tcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  1273195 tcccctccgttagttttttaatgtttaatatttttgatatgat 1273237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 4124828 - 4124934
Alignment:
Q  315 ttttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 414  Q
    |||||||||| || |||||||||||| ||| || ||| |||||| | |||||| |||||||||||||| ||||||| | || |||  | |||||||| ||    
T  4124828 ttttggtcccttttgttttgctccgttagttaatttggtccccttcattagttgtttaatgtttaaaaattttgatttaattttaaccatttgattgtat 4124927  T
Q  415 atccatt 421  Q
    |||||||    
T  4124928 atccatt 4124934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 13520864 - 13520794
Alignment:
Q  278 agtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaa 348  Q
    |||||||| ||| || | |||||||||||||| |||||||||||||  ||||||||||||||| |||||||    
T  13520864 agtttacactttagttccataaattataaaacccacattttggtcctcttggttttgctccgttagtcaaa 13520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 41144634 - 41144530
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||  ||||||||||||| |||||    |||| ||||||||||| ||||||| |||||   || |||||||||| ||| ||||||||||| ||    
T  41144634 cttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgttag 41144535  T
Q  344 tcaaa 348  Q
    |||||    
T  41144534 tcaaa 41144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 13519540 - 13519647
Alignment:
Q  312 acattttggtcccattggttttgctccgtcagtcaaattgatcccctccg-----ttagttttttaatgtttaaaatttttgatatgatattagtcgttt 406  Q
    ||||||||||||   | ||||||||||||  |||||||||||||| ||||     ||||||||||||||| ||||| |||||||||||| |||  | |||    
T  13519540 acattttggtccttcttgttttgctccgtttgtcaaattgatcccttccgttagtttagttttttaatgtctaaaacttttgatatgattttaaccattt 13519639  T
Q  407 gattgcat 414  Q
    ||||||||    
T  13519640 gattgcat 13519647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 5975870 - 5975932
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattat 423  Q
    |||||||||||||||| |||| ||||||||||||| |||  | ||||||||||| ||||||||    
T  5975870 gttagttttttaatgtctaaagtttttgatatgattttaaccatttgattgcatgtccattat 5975932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 15857624 - 15857586
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  15857624 ctccgttagttttttaatgtttaatatttttgatatgat 15857586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 8521252 - 8521360
Alignment:
Q  241 tgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgt 340  Q
    ||||||||| || ||||||||||| ||| |||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    ||||  ||||||    
T  8521252 tgacttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgt 8521351  T
Q  341 cagtcaaat 349  Q
    |||||||||    
T  8521352 cagtcaaat 8521360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 10735763 - 10735867
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    ||||||||||| ||||||||||||| ||||||   |||| ||||||||||| |||| |  |||||   || ||||||||||  | |||||||||||| ||    
T  10735763 cttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgttag 10735862  T
Q  344 tcaaa 348  Q
    |||||    
T  10735863 tcaaa 10735867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 18695653 - 18695617
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatg 393  Q
    |||||||||||||||||||| ||||||||||||||||    
T  18695653 ctccgttagttttttaatgtctaaaatttttgatatg 18695617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 392
Target Start/End: Complemental strand, 5384352 - 5384317
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatat 392  Q
    |||||||||||||||||||||||| |||||||||||    
T  5384352 ctccgttagttttttaatgtttaatatttttgatat 5384317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 395
Target Start/End: Complemental strand, 22812397 - 22812354
Alignment:
Q  353 tcccctccgttagtttttt-aatgtttaaaatttttgatatgat 395  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  22812397 tcccctccgttagtttttttaatgtttaatatttttgatatgat 22812354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 32757826 - 32757905
Alignment:
Q  245 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    ||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||    
T  32757826 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtccc 32757905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 224596 - 224559
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatga 394  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  224596 ctccgttagttttttaatgtctaaattttttgatatga 224559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 35047495 - 35047595
Alignment:
Q  320 gtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatcca 419  Q
    ||||| || |||||||||||| |||||||  | |||  ||| |||||||||||||| ||||| |||||||||| || ||| || || |||||||| ||||    
T  35047495 gtcccttttgttttgctccgttagtcaaaaaggtcca-tccattagttttttaatgcttaaattttttgatataattttaatcattcgattgcatgtcca 35047593  T
Q  420 tt 421  Q
    ||    
T  35047594 tt 35047595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 8523862 - 8523794
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 312  Q
    |||||| || ||||||||||||||| |||||   ||||| ||||||||||| |||| | ||||||||||    
T  8523862 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactca 8523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 21389149 - 21389113
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatg 393  Q
    |||||||||||||||||||| |||||||||| |||||    
T  21389149 ctccgttagttttttaatgtctaaaattttttatatg 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 32759164 - 32759084
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  ||||||||||    
T  32759164 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccc 32759084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 45299033 - 45298855
Alignment:
Q  17 acctatccctacaatggtcatcattcttttgttcgtctcaaccatggcaacacaagaatggtgtcaacgttgagtattgttgtccgtccacaaacaagcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45299033 acctatccctacaatggtcatcattcttttgttcgtctcaaccatggcaacaccagaatggtgtcaacgttgagtattgttgtccgtccacaaacaagcc 45298934  T
Q  117 gtgatagttaggcatacttgca------acaccttaagtttcacaattgtgggaatataatgtgttgaatgagtgtatg 189  Q
    ||||||||||| ||||||||||      ||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  45298933 gtgatagttagacatacttgcacctttgacaccttaagttttataattgtgggaatataatgtgttgaataagtgtatg 45298855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 434
Target Start/End: Original strand, 9853567 - 9853757
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||| ||||| | |||  |||||||||||  ||||| |||||||||| ||||||| ||||||| | ||||||||| | | ||||||||||||||||    
T  9853567 cttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtctcctgggttttgctccgtcag 9853666  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 434  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||||| || |||  |||||||||||||||||||||||||||||||||    
T  9853667 tcaaattgatcccctccgttagttttttaatatctaaattttttgatataattttaaccgtttgattgcatatccattatacctatagtga 9853757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 262 - 454
Target Start/End: Original strand, 42793717 - 42793910
Alignment:
Q  262 cccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctccg 361  Q
    ||||||||||||||  |||||| |||||||||| ||||||| ||||| | |||||||||||||  | |||||||||||| |||||||  | ||||||| |    
T  42793717 cccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctg 42793816  T
Q  362 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 454  Q
    ||| ||||||||||| ||||| |||||||||||| |||  | || |||||||| |||||| ||  | ||||||| |||||||||||||||||||    
T  42793817 ttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaattttt 42793910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 9854995 - 9854891
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||  |||||||||||||  ||| ||||||||||||||    
T  9854995 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcctcttgattttgctccgtcag 9854896  T
Q  344 tcaaa 348  Q
    |||||    
T  9854895 tcaaa 9854891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 394
Target Start/End: Original strand, 38697170 - 38697306
Alignment:
Q  258 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccc 357  Q
    ||||||| ||||||||||| | ||||||||||||||  ||||||||||||||  ||||||||||||| ||  ||||||||| |||||||||  | |||||    
T  38697170 tggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtcccttttattttgctccctcagtcaaaaaggtcccc 38697269  T
Q  358 tccgttagttttttaatgtttaaaatttttgatatga 394  Q
    ||||||| | ||||||||| ||||| |||||||||||    
T  38697270 tccgttactattttaatgtctaaaacttttgatatga 38697306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 454
Target Start/End: Original strand, 24191463 - 24191587
Alignment:
Q  330 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctat 429  Q
    |||||||| || | |||||||||||| |||||||||||| ||||||| |||| |||||||| |||| |||  ||||||||||||| |||||| || ||||    
T  24191463 ttttgctctgttactcaaattgatccactccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatctat 24191562  T
Q  430 agtgagccatcgacacctaattttt 454  Q
    ||||| || ||  ||||||||||||    
T  24191563 agtgaaccgtcagcacctaattttt 24191587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 43203310 - 43203219
Alignment:
Q  330 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||| | || |||  | ||||||||||| ||||||    
T  43203310 ttttgctccgtcagtcaatttggtcccctccgttagttttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccatt 43203219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 454
Target Start/End: Complemental strand, 45396042 - 45395924
Alignment:
Q  336 tccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgag 435  Q
    |||||||||||||||| ||| |||||||||||| ||||||| | | |||||| ||| ||| |||  ||||||||||||| |||||| ||  |||||| |     
T  45396042 tccgtcagtcaaattggtccactccgttagtttcttaatgtctgatattttttatacgattttaaccgtttgattgcatgtccattgtatatatagtaaa 45395943  T
Q  436 ccatcgacacctaattttt 454  Q
    |||||| ||||||||||||    
T  45395942 ccatcggcacctaattttt 45395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 22621136 - 22621076
Alignment:
Q  361 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||    
T  22621136 gttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccatt 22621076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 395
Target Start/End: Original strand, 31844436 - 31844519
Alignment:
Q  312 acattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||||  | |||||||||||| |||||| ||| ||||||||||| ||  |||||| | ||||||||||||| ||||    
T  31844436 acattttggtccctcttgttttgctccgttagtcaatttggtcccctccgtttgtcctttaatttctaaaatttttgatttgat 31844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 38696299 - 38696388
Alignment:
Q  235 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||| ||| |||||| || ||||||||||||||| ||||| | ||||| ||||||||||  |||| | ||||||||||  ||||||||||    
T  38696299 ttttcttggcttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccc 38696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 28291295 - 28291350
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 299  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  28291295 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 28291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 39516510 - 39516439
Alignment:
Q  350 tgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 421  Q
    |||||| |||||||||||||||||||| |||| ||||| || |||| |||  | ||||||||||| ||||||    
T  39516510 tgatcctctccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccatt 39516439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 16362529 - 16362567
Alignment:
Q  357 ctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  16362529 ctccgttagttttttaatgtctaatatttttgatatgat 16362567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 28291486 - 28291401
Alignment:
Q  239 attgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||| ||||||||||  ||| ||||||||||||||||| ||||| || |||||||| |||| |  ||||| | |||||| ||||||    
T  28291486 attggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccc 28291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 34616245 - 34616282
Alignment:
Q  358 tccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  34616245 tccgttagttttttaatgtttaatatttttaatatgat 34616282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 36757232 - 36757188
Alignment:
Q  351 gatcccctccgttagttttttaatgtttaaaatttttgatatgat 395  Q
    ||||| |||| ||||||||||||||| |||| |||||||||||||    
T  36757232 gatcctctccattagttttttaatgtctaaattttttgatatgat 36757188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 38697880 - 38697972
Alignment:
Q  256 tttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaa 348  Q
    ||||||||||||| ||||| |   ||||||||||||| | |||| || |||||   |||||||||||||  | |||||||||||| |||||||    
T  38697880 tttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaaa 38697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 244 - 454
Target Start/End: Original strand, 6895 - 7105
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  |||||||||| || |||||||||||||||| |    
T  6895 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctccgtcgg 6994  T
Q  344 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcga 442  Q
    |||||||||| |||||||||||||||| ||| | |||| |||||||||| || |||  ||||||||||||| |||||||||  | ||||||| || || |    
T  6995 tcaaattgat-ccctccgttagtttttcaatatctaaattttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaa 7093  T
Q  443 cacctaattttt 454  Q
    ||||||||||||    
T  7094 cacctaattttt 7105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 8306 - 8194
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||| || ||||||||||||| ||||| |  |||||||||||||||| |||| |  |||||   |||||||||||||  | ||||| |||||| ||    
T  8306 cttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgttag 8207  T
Q  344 tcaaattgatccc 356  Q
    |||| ||||||||    
T  8206 tcaatttgatccc 8194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 11722786 - 11722890
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 343  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  11722786 cttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctcttggttttgctccgtcag 11722885  T
Q  344 tcaaa 348  Q
    |||||    
T  11722886 tcaaa 11722890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 21777570 - 21777496
Alignment:
Q  274 tatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaa 348  Q
    ||||||||||||||||||||| |||| || ||||||||||| ||  ||||  ||||||||| |||||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 21777496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 138223 - 138176
Alignment:
Q  343 gtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 390  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  138223 gtcaaattgatcccctccgttatttttttaatgtctaaactttttgat 138176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 146244 - 146197
Alignment:
Q  343 gtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 390  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  146244 gtcaaattgatcccctccgttatttttttaatgtctaaactttttgat 146197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 18242317 - 18242215
Alignment:
Q  353 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattata-cctatagtgagccatcgacacctaatt 451  Q
    |||||||||||||||||||||||| | |||||||| || | || |||  | ||||||||||| |||||| ||   |||||||| |||||  |||||||||    
T  18242317 tcccctccgttagttttttaatgtcttaaatttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaaccatcatcacctaatt 18242218  T
Q  452 ttt 454  Q
    |||    
T  18242217 ttt 18242215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 128707 - 128627
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || ||||||||||| ||| ||||| | ||||| |||||||||||||| | | ||||||||||  ||||||||||    
T  128707 cttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtccc 128627  T

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Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 127433 - 127513
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || ||||||||||||||| |||||   ||||| | ||||||||| |||| | ||||||||||  ||||||||||    
T  127433 cttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccc 127513  T

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Target: scaffold2071 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 797 - 717
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||||||| |||| |||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  797 cttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccc 717  T

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Target: scaffold1251 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 1201 - 1121
Alignment:
Q  244 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 324  Q
    |||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  1201 cttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccc 1121  T

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