View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_high_6 (Length: 381)
Name: NF2564_high_6
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 2534466 - 2534182
Alignment:
| Q |
1 |
accttattgccaggaacctcaatttctcgtgtggttgttgtgtcagagccgggtacaggttgattttgtctagaagaagaagcatcatgctgaaaggtgg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2534466 |
accttattgctaggaacctcaatttctcgtgtggttgttgtgtcagagccggatataggttgattttgtctagaagaagaagcataatgctgaaaggtgg |
2534367 |
T |
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| Q |
101 |
gatcaatagagctggaatcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattatctttaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
2534366 |
gatcaatagagctggaatcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtggggtcagtagtttcttctgtattatctttaga |
2534267 |
T |
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| Q |
201 |
tacatcttgaacttcctctgaagaagcgttttcctctggctcaccaaaaccgtaacattaataacaacctatgaaagacactctt |
285 |
Q |
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| T |
2534266 |
tacatcttgaacttcctctgaagaagcgttttcctctggctcaccaaaacagtaacattaataacaacctatgaaagacactctt |
2534182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2525453 - 2525698
Alignment:
| Q |
1 |
accttattgccaggaacctcaatttctcgtgtggttgttgtgtcagagccgggtacaggttgattttgtctagaagaagaagcatcatgctgaaaggtgg |
100 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||| |||| || |||||| ||||||| | |||||||||||||||||||||||| |
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| T |
2525453 |
accttattgctaggaacctcaatttcttgtgtggttgttgtgtcagacccggatataggttgcttttgtc---caaaagaagcatcatgctgaaaggtgg |
2525549 |
T |
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| Q |
101 |
gatcaatagagctggaatcaacatg---aatctctt----tggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattat |
193 |
Q |
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| T |
2525550 |
gatcaattgagctggaatcaagttgttcaattgatttagatggc-tcctcaacatgaatctctttggtatcggtaggctcagccgtttcttctgaattat |
2525648 |
T |
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| Q |
194 |
ctttagatacatcttgaacttcctctgaagaagcgttttcctctggctca |
243 |
Q |
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| T |
2525649 |
ctttagattcatcttgaatttcctcagaatgagcattttcctctggctca |
2525698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 44172879 - 44172930
Alignment:
| Q |
330 |
tgacaccaacacaacacaagcacaaataattacattggattatgtcattttc |
381 |
Q |
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| T |
44172879 |
tgacaccaacacaacacaaacacatgtgattacattgaattatgtcattttc |
44172930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 2534166 - 2534128
Alignment:
| Q |
343 |
acacaagcacaaataattacattggattatgtcattttc |
381 |
Q |
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| T |
2534166 |
acacaaacacaaataattacattgaattatgtcattttc |
2534128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 1772622 - 1772742
Alignment:
| Q |
118 |
tcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattatctttagatacatcttgaacttcct |
217 |
Q |
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|||||| ||||||||||| ||||||| || ||||||| |||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
1772622 |
tcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcct |
1772721 |
T |
|
| Q |
218 |
ctgaagaagcgttttcctctg |
238 |
Q |
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| |||| ||| |||||||||| |
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| T |
1772722 |
ccgaaggagcattttcctctg |
1772742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1772409 - 1772522
Alignment:
| Q |
1 |
accttattgccaggaacctcaatttctcgtgtggttgttgtgtcagagccgggtacaggttgattttgtctagaagaagaagcatcatgctgaaaggtgg |
100 |
Q |
| |
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|||||||||| ||||||||| |||| ||||||| ||||||||||| || | || |||||| ||||||| ||||||| ||||||||| ||||||| |
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| T |
1772409 |
accttattgctaggaacctcgatttttcgtgtg---gttgtgtcagacccagatataggttgcttttgtc---ctgaagaagtatcatgctgtaaggtgg |
1772502 |
T |
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| Q |
101 |
gatcaatagagctggaatca |
120 |
Q |
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| T |
1772503 |
ggtcaatagagctggaatca |
1772522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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