View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_low_1 (Length: 621)
Name: NF2564_low_1
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 4365913 - 4365314
Alignment:
| Q |
1 |
tttggttccggatatgaactttgtacatgcttaaaaagaaagaaagatacttatttagatgaactagagaaagcatgaaaactactgcataaaacatgtt |
100 |
Q |
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| T |
4365913 |
tttggttccggatatgaactttgtacatgcttaaaaagaaagaaagatacttgtttagatgaactagagaaagcctgaaaactactgcacaaaacatgtt |
4365814 |
T |
|
| Q |
101 |
cagtgtgtgatttttcataaattcttggaacaatatttttagacgggaccaattgcatcatgttcatacttcataggttagctgaataccttcaataaaa |
200 |
Q |
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| T |
4365813 |
cagtgtgtgatttttcataaattcttggaacaatatttttagacgggaccaattgcatcatgttcatacttcataggttagctgaataccttcaataaaa |
4365714 |
T |
|
| Q |
201 |
tctagaaaattttcagacatcgtatgactatccgtttatagtttttatcgattgcaactctggattaaaactatatt-----gattagtttgaatgtgtg |
295 |
Q |
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| T |
4365713 |
tctagaaaattttcagacatcgtatgactatccgtttatagtttttatcgattgcaactctggattaaaactatattatattgattagtttgaatgtgtg |
4365614 |
T |
|
| Q |
296 |
atttttcctggattaattacttggagttttgatacgagaccaactgcatctccttcgtatgttaattggttatctccaataaattctacagaaatgtttg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365613 |
atttttcctggattaattacttggagttttgatacgagaccaactgcatctccttcgtatgttaattggttatctccaataaattctacagaaatgtttg |
4365514 |
T |
|
| Q |
396 |
atttcattttacatatcattcatggttttaattgaaggatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttt |
495 |
Q |
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| T |
4365513 |
atttcattttacatatcattcatggttttaattgaaggatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttt |
4365414 |
T |
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| Q |
496 |
tatacctttctataaggtattgaatgatagatatgattgtctaaatgtaaattctatgtgaatttggacggctttgtccttttatgtattgaattgtata |
595 |
Q |
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| T |
4365413 |
tatacctttctataaggtattcaatgatagatatgattgtctaaatgtaaattctatgtgaatttggacggctttgtccttttatgtattgaattatata |
4365314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 333 - 528
Target Start/End: Complemental strand, 33652513 - 33652320
Alignment:
| Q |
333 |
gaccaactgcatctccttcgtatgttaattggttatctccaataaattctacagaaatgtttgatttcattttacatatcattcatggttttaattgaag |
432 |
Q |
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|||||| |||||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| | |
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| T |
33652513 |
gaccaattgcatcgccttcgtatgctaattggttatctctagtaaattctacaaaaatgtttgatttcgtttta-atatcattcatggttttaactgatg |
33652415 |
T |
|
| Q |
433 |
gatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttttatacctttctataaggtattgaatgatagata |
528 |
Q |
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| T |
33652414 |
gatagttttgcagaaa-attctggttggtactattttagtattccatgtttattttcatgttttatgatttcctatgaggtattcaatgatagata |
33652320 |
T |
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