View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_low_10 (Length: 347)
Name: NF2564_low_10
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 36896804 - 36897123
Alignment:
| Q |
13 |
taggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctaggtgg |
112 |
Q |
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| T |
36896804 |
taggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctaggtgg |
36896903 |
T |
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| Q |
113 |
ttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagtactnnnnnnnnnnnnnnnnnnnnnn |
212 |
Q |
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| T |
36896904 |
ttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagtactagcagcagcagcagaagcagca |
36897003 |
T |
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| Q |
213 |
ntaagagctgtatcttcgaaatagattcgttggccaaatttcaagccattaagtgaggactcttctgaagaagagttgcctcctgaatccattggtgtgt |
312 |
Q |
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| T |
36897004 |
gtaagagctgtatcttcgaaatagattcgttggccaaatttcaagccattaagtgaggactcttctgaagaagagttgcctcctgaatccattggtgtgt |
36897103 |
T |
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| Q |
313 |
aaggtttggtggtggttgct |
332 |
Q |
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| T |
36897104 |
aaggtttggtggtggttgct |
36897123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 22682233 - 22682327
Alignment:
| Q |
18 |
gatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctaggtgg |
112 |
Q |
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| T |
22682233 |
gattttgaatgcatgcaacaaactttatgtctagaataataagccttagcaccactcagatctactttacaaccttcaacttgacacctaggtgg |
22682327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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