View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_low_11 (Length: 257)
Name: NF2564_low_11
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 3635683 - 3635436
Alignment:
| Q |
10 |
aacaaaattaaggaactagatacaactgcaaccgcgatttaaaacctcgattagttcaaagatatatctatactatccaataatattttataaaactaac |
109 |
Q |
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| T |
3635683 |
aacaatatcaaggaactagatacaactgcaaccgcgatttaaaacctcgattagttcaaagatatatctatactatccaataatattttataaaactaac |
3635584 |
T |
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| Q |
110 |
tttttgttgtacccatttaacaatgataattaaattatagcgcaagtacttgcataaaaagaagagataacaaatattgggatcacaccttcacataagt |
209 |
Q |
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| T |
3635583 |
tttttgttgtacccatttaacaatgataattaaattatagtgcaagtacttgcataaaaagaagagataacaaatattgggatcacaccttcacataagt |
3635484 |
T |
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| Q |
210 |
caacttatcaacccatgttccaatcaaaggaccaaacaatgcaatgga |
257 |
Q |
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| T |
3635483 |
caacttatcaacccatgttccaatcaaaggaccaaacaatgcaatgga |
3635436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 3644939 - 3644868
Alignment:
| Q |
186 |
ttgggatcacaccttcacataagtcaacttatcaacccatgttccaatcaaaggaccaaacaatgcaatgga |
257 |
Q |
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| T |
3644939 |
ttgggatcacaccttttggtaagtcaacttatcaacccatgttccaattatgggaccaaacaatgcaatgga |
3644868 |
T |
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