View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_low_3 (Length: 508)
Name: NF2564_low_3
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 353
Target Start/End: Complemental strand, 52390917 - 52390568
Alignment:
| Q |
4 |
aagttacagcttaaaaaatgtttatgaaacaaagcaactagtatagcattgagctgcaattattgcaacacttccatctcatcaaactgcaattgtgtat |
103 |
Q |
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| T |
52390917 |
aagttacagcttaaaaaatgtttatgaaacaaagcaactagtatagcattgagatgcaattattgcaacacttccatctcatcaaactgcaattatgtat |
52390818 |
T |
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| Q |
104 |
gcctattaacgtaattttcatcgctttcaggcattatacattagtttgaagatggttttcttgacaaatgatacataaaccaaagacgaatagaaaatgc |
203 |
Q |
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| T |
52390817 |
ggctattaacgtagttttcatcgctttcaggcattatgcattagtttgaagatggttttcttgacaaatgacacataaactaaagacgaatagaaaatgc |
52390718 |
T |
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| Q |
204 |
aacttggagaagaatttattacaaaaattaaagcgttgacacaaggagagggacaagttacacacaaattgccctgctccaaatcaactactcctaacta |
303 |
Q |
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| T |
52390717 |
aacttggagaagaatttattacaaaaattaaagcgttgacacaaggagagggacaagttgcacacaaactgccctgctccaaatcaactactcctaacta |
52390618 |
T |
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| Q |
304 |
agtctaaacacgtgtccgtaatacaagaatttattaccagaagattgatt |
353 |
Q |
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| T |
52390617 |
agtctaaacacgtgtccgtaatacaagaatttattaccagaagattgatt |
52390568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 356 - 494
Target Start/End: Complemental strand, 52390536 - 52390398
Alignment:
| Q |
356 |
gagatttaaacctatatataagannnnnnnnnatttcaattatgtccactataataattgagtaaatctagagaatgacaaacatagagatctatttccg |
455 |
Q |
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| T |
52390536 |
gagatttaaacctatatataagatttttttttatttcaattatgtccactataataattgagtaaatctagagaatgacaaacagagagatctatttccg |
52390437 |
T |
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| Q |
456 |
taatacatgactgtattcttcaggctgcggttgtacatg |
494 |
Q |
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| T |
52390436 |
taatacatgactgtattcttcaggctgcggttgtacatg |
52390398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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