View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2564_low_5 (Length: 482)
Name: NF2564_low_5
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_low_5 |
 | |
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| [»] chr5 (15 HSPs) |
| |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 21 - 482
Target Start/End: Complemental strand, 3300214 - 3299745
Alignment:
| Q |
21 |
gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgccgaatata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3300214 |
gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatata |
3300115 |
T |
|
| Q |
113 |
attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300114 |
attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac |
3300015 |
T |
|
| Q |
213 |
tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3300014 |
tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga |
3299915 |
T |
|
| Q |
313 |
tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3299914 |
tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg |
3299815 |
T |
|
| Q |
413 |
cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatctttta |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299814 |
cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatctttta |
3299745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 21 - 482
Target Start/End: Complemental strand, 3393107 - 3392638
Alignment:
| Q |
21 |
gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgccgaatata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3393107 |
gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatata |
3393008 |
T |
|
| Q |
113 |
attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3393007 |
attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac |
3392908 |
T |
|
| Q |
213 |
tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392907 |
tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga |
3392808 |
T |
|
| Q |
313 |
tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3392807 |
tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg |
3392708 |
T |
|
| Q |
413 |
cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatctttta |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392707 |
cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatctttta |
3392638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 235 - 482
Target Start/End: Original strand, 1163333 - 1163583
Alignment:
| Q |
235 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtg |
334 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163333 |
aaatataaaaaagctaataaatgaaaagcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagta |
1163432 |
T |
|
| Q |
335 |
g---atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggt |
431 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||| | || | || |||||||||||| |||| ||||||||| |
|
|
| T |
1163433 |
gatcatcatccatcaagcaaatcctccaatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggt |
1163532 |
T |
|
| Q |
432 |
agattgctcttcggtcgaagaggagtttagtgtcttgttgtagatctttta |
482 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1163533 |
agattgctctttggtcgaagaggagtttagggtcttgttgtagatctttta |
1163583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 1850293 - 1850192
Alignment:
| Q |
330 |
aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg |
429 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| ||||||| |
|
|
| T |
1850293 |
aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg |
1850194 |
T |
|
| Q |
430 |
gt |
431 |
Q |
| |
|
|| |
|
|
| T |
1850193 |
gt |
1850192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 1163164 - 1163288
Alignment:
| Q |
84 |
ggtgaaatgtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatatcaaa |
174 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1163164 |
ggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaa |
1163259 |
T |
|
| Q |
175 |
cagaaattgcaaattgcaacagagtaagt |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
1163260 |
cagaaattgcaaattgcaacaaagtaagt |
1163288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 40418758 - 40418614
Alignment:
| Q |
235 |
aaatagaaaaaagctaataaatgaaaagcatcttccttg--ttttg--gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta |
330 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||| |||||||||| |||||||||| || | ||||||| |||||||||||| ||| |
|
|
| T |
40418758 |
aaatagaaagaacctaataaatgaaaagcatcttccttgatttttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagta |
40418659 |
T |
|
| Q |
331 |
agtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
375 |
Q |
| |
|
| | |||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
40418658 |
actagatcatccgtcaagcaagtcctccaatggaacaaaaggtct |
40418614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 1850444 - 1850346
Alignment:
| Q |
149 |
ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac--------tagttgttcttgttatcggaataaata |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1850444 |
ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaagaaccttttaagtatttgttcttgttatcggaataaata |
1850346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 38988180 - 38988036
Alignment:
| Q |
235 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttt----tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta |
330 |
Q |
| |
|
||||||||| || |||||||||||| |||| |||||||| || | |||||||||| ||||||||||||| | ||||||| |||||||||||| || |
|
|
| T |
38988180 |
aaatagaaagaacctaataaatgaagagcagcttccttgattgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtg |
38988081 |
T |
|
| Q |
331 |
agtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
375 |
Q |
| |
|
| | |||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
38988080 |
actagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
38988036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 39880297 - 39880151
Alignment:
| Q |
235 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt |
327 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| || | ||||||||| || |||||||||| | ||||||| |||||||||||| |
|
|
| T |
39880297 |
aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaa-aaaacatcaacaaaagtgatttttgtttaagcta |
39880199 |
T |
|
| Q |
328 |
gtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
375 |
Q |
| |
|
|||| | |||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
39880198 |
gtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtct |
39880151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 39880540 - 39880491
Alignment:
| Q |
43 |
agtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg |
92 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39880540 |
agtgcaacatatggaagacaggaaagtaaatggtagggtgaggtgaaatg |
39880491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 39726906 - 39726755
Alignment:
| Q |
235 |
aaatagaaaaaagctaataaatgaaaagcatcttcc-------ttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt |
327 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
39726906 |
aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagcta |
39726807 |
T |
|
| Q |
328 |
gtaa----gtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
375 |
Q |
| |
|
|||| | |||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
39726806 |
gtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
39726755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 39880405 - 39880327
Alignment:
| Q |
156 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| || |||||||||| || |||||||| |
|
|
| T |
39880405 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa |
39880327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 40418860 - 40418782
Alignment:
| Q |
156 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| || |||||||||| || |||||||| |
|
|
| T |
40418860 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa |
40418782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 38988282 - 38988229
Alignment:
| Q |
156 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
38988282 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag |
38988229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 40418573 - 40418512
Alignment:
| Q |
416 |
ttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatc |
477 |
Q |
| |
|
|||||| ||| ||||||| ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
40418573 |
ttggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatc |
40418512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 379
Target Start/End: Original strand, 44444395 - 44444543
Alignment:
| Q |
235 |
aaatagaaaaaagctaataaatgaaaagcatcttccttg----ttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta |
330 |
Q |
| |
|
||||||||| || ||||||||||||| |||| ||||||| |||| ||||||||| ||||||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
44444395 |
aaatagaaataacctaataaatgaaaggcatattccttgattgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgta |
44444494 |
T |
|
| Q |
331 |
agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttcta |
379 |
Q |
| |
|
| | |||||||| |||||||| ||||| |||||| ||||| ||||||| |
|
|
| T |
44444495 |
actagatcatccgtcaagcaagtcctctaatggaacaaaagatcttcta |
44444543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 25911951 - 25912046
Alignment:
| Q |
280 |
ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
375 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
25911951 |
ttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtct |
25912046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 25911657 - 25911698
Alignment:
| Q |
50 |
cacatggaagacaggaaagtaaatggaagggtgaggtgaaat |
91 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25911657 |
cacatggaagacaggaaagtaaatggtagggtgaggtgaaat |
25911698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 25911785 - 25911821
Alignment:
| Q |
156 |
aataaacataaatatcaaacagaaattgcaaattgca |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25911785 |
aataaacataagtatcaaacagaaattgcaaactgca |
25911821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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