View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2564_low_6 (Length: 391)
Name: NF2564_low_6
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2564_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 6830341 - 6830020
Alignment:
| Q |
5 |
tgtccaagaaaataaaatagattaaaaacttaaaagatacattcagctcaaaatttcgattggcaagcacatccatatacactaggagcataacattata |
104 |
Q |
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| T |
6830341 |
tgtccaacaaaataaaatagattaaaaacttaacagatacattcagctcaaaatttcgattggcaagcacatccatatacactaggagcataacattata |
6830242 |
T |
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| Q |
105 |
aaatatgaacacgtcacaaagaatacctgcaattcattcatcatactataatactttaaaatgctaatcatttcaatatctgcaaataaatcacaacaca |
204 |
Q |
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| T |
6830241 |
aaatatgaacacgtcacaaagaatacctgcaattcat----catactataatactttaaaatgctaatcatttcaatatctgcaaataaatcacaacaca |
6830146 |
T |
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| Q |
205 |
gtaaacaaagacacactaaaaagtaacaattaaggtccaatcttcttattcatcaatcagacaaatggcatcactaaatttatagacgccaactaaaact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
6830145 |
gtaaacaaagacacactaaaaagtaacaattaaggttcaatcttcttattcatcaatcagactaatggaatcactaaatttatagacgccaactaaaact |
6830046 |
T |
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| Q |
305 |
cataaacgcttaagaacttgattcac |
330 |
Q |
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| T |
6830045 |
cataaacgcttaagaacttgattcac |
6830020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 251 - 375
Target Start/End: Complemental strand, 6821625 - 6821501
Alignment:
| Q |
251 |
tattcatcaatcagacaaatggcatcactaaatttatagacgccaactaaaactcataaacgc-ttaagaacttgattcacatacaaactaaaggaaacc |
349 |
Q |
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| T |
6821625 |
tattcatcaatcagactaatgaaatcattaaatttatagacaccaactaaaattcataaaagctttaagaacttgattcacatacaaact-aaggaagcc |
6821527 |
T |
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| Q |
350 |
attactagaactagtctgcttcttat |
375 |
Q |
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| T |
6821526 |
attactagaactggtctgcttcttat |
6821501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 6807071 - 6806962
Alignment:
| Q |
32 |
acttaaaagatacattcagctcaaaatttcgattggcaagcacatccatatacactaggagcataacattataaaatatgaacacgtcacaaagaatacc |
131 |
Q |
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|||||||||| | || || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
6807071 |
acttaaaagacaaatccaactcaaaatttcaattggcaagcacttccatatacactaggagcataacattataaaatatgaacacatcacataggatacc |
6806972 |
T |
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| Q |
132 |
tgcaattcat |
141 |
Q |
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| | |||||| |
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| T |
6806971 |
tccgattcat |
6806962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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