View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2564_low_8 (Length: 368)

Name: NF2564_low_8
Description: NF2564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2564_low_8
NF2564_low_8
[»] chr4 (4 HSPs)
chr4 (1-355)||(48912551-48912905)
chr4 (147-347)||(48965094-48965294)
chr4 (147-260)||(48957909-48958022)
chr4 (157-247)||(48967233-48967323)
[»] scaffold0536 (2 HSPs)
scaffold0536 (102-344)||(6728-6970)
scaffold0536 (66-306)||(10748-10988)
[»] chr5 (2 HSPs)
chr5 (154-344)||(28385106-28385296)
chr5 (147-329)||(12540450-12540632)
[»] chr2 (3 HSPs)
chr2 (157-344)||(13439975-13440162)
chr2 (157-247)||(13448138-13448228)
chr2 (150-332)||(13454602-13454784)
[»] chr8 (1 HSPs)
chr8 (147-247)||(12641795-12641895)
[»] chr7 (1 HSPs)
chr7 (154-344)||(3417744-3417934)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 48912905 - 48912551
Alignment:
Q  1 atatttatttttggtggatagtactcaaaataatagacttcatttatgtgtcatacacatagataaataaacaaaaatgacttttagattagagctttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48912905 atatttatttttggtggatagtactcaaaataatagactacatttatgtgtcatacacatagataaataaacaaaaatgacttttagattagaggtttgt 48912806  T
Q  101 tgtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912805 tgtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcg 48912706  T
Q  201 agcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttcccca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912705 agcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttcccca 48912606  T
Q  301 ataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacct 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912605 ataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacct 48912551  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 347
Target Start/End: Original strand, 48965094 - 48965294
Alignment:
Q  147 atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat 246  Q
    |||||| || |||||||||| ||| ||  || |||| || || ||||||||| ||||| |   ||| |||||||||||||||||||||||||||||||||    
T  48965094 atgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaat 48965193  T
Q  247 cgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcc 346  Q
    | | ||||| ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    | |||||| |||||||| || ||||| |||||||    
T  48965194 ctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatcc 48965293  T
Q  347 c 347  Q
    |    
T  48965294 c 48965294  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 48957909 - 48958022
Alignment:
Q  147 atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat 246  Q
    ||||||||| |||||||||| ||  ||  || |||| || || || |||||| ||||| | ||| |||||| ||||||||||||||||| ||||||||||    
T  48957909 atgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaat 48958008  T
Q  247 cgcttcacaacctt 260  Q
    | ||||||| ||||    
T  48958009 ctcttcacagcctt 48958022  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 48967233 - 48967323
Alignment:
Q  157 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 247  Q
    |||||||||| || |||  || |||| || || ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967233 ccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

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Target: scaffold0536 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 102 - 344
Target Start/End: Complemental strand, 6970 - 6728
Alignment:
Q  102 gtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcga 201  Q
    |||||||||| ||||||||| ||  | |||||| |||||||||  |||||||||||||||||||| |   ||||||||||| || |||||||||||||||    
T  6970 gtccctcaatattttaagatcatcgatcacagccgttaaattcctatgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcga 6871  T
Q  202 gcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaa 301  Q
    ||||  | | |||||||||||||||| |||||||  |||||||||| | ||||| ||||||||||| |||||||||  |||||||||||||| |||||||    
T  6870 gcatactttttgattttctcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaa 6771  T
Q  302 taccagttgtgctccattccgttgcaccgacctccaccccaat 344  Q
    |||||||||  ||||| || | ||| || ||| ||||||||||    
T  6770 taccagttgaactccactcagctgcccccaccaccaccccaat 6728  T

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Target: scaffold0536; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 306
Target Start/End: Complemental strand, 10988 - 10748
Alignment:
Q  66 aataaacaaaaatgacttttagattagagctttgttgtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttct 165  Q
    |||||||||||||| |||||| | || |  ||| ||||||||||| |||||||||| ||| | ||   ||||||||||   ||||||||||||||||||     
T  10988 aataaacaaaaatgccttttatactaaaagtttattgtccctcaaacttttaagatcattgatcaacactgttaaatttctatgagatgaaccaccttcc 10889  T
Q  166 ttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaa 265  Q
    | |   |||  |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | |||||||||||| |||||||||||||||||    
T  10888 tgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaa 10789  T
Q  266 tattatccctccaaaccaccttctctctttccccaatacca 306  Q
    ||  ||||||||  |||| ||||||| | ||||||||||||    
T  10788 taccatccctcccgaccaacttctctttctccccaatacca 10748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 344
Target Start/End: Original strand, 28385106 - 28385296
Alignment:
Q  154 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 253  Q
    ||||||||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | |||    
T  28385106 gaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctca 28385205  T
Q  254 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 344  Q
     | ||||||| || ||||| || |  |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| |||||    
T  28385206 tagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaat 28385296  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 329
Target Start/End: Original strand, 12540450 - 12540632
Alignment:
Q  147 atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat 246  Q
    |||||| ||||||||||||| ||  ||  || |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  |||||||||    
T  12540450 atgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaat 12540549  T
Q  247 cgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcacc 329  Q
    | | ||| | ||||||| ||   ||| || | ||||| ||||| ||| |||||| ||||| |||| | |||||| ||||||||    
T  12540550 ctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacc 12540632  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 344
Target Start/End: Original strand, 13439975 - 13440162
Alignment:
Q  157 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 256  Q
    |||||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | |||||     
T  13439975 ccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacag 13440074  T
Q  257 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 344  Q
    ||||||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| |||||    
T  13440075 ccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaat 13440162  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 13448138 - 13448228
Alignment:
Q  157 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 247  Q
    |||||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| |||||||||||    
T  13448138 ccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatc 13448228  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 332
Target Start/End: Original strand, 13454602 - 13454784
Alignment:
Q  150 agatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgc 249  Q
    |||||| ||||||| || ||| || ||| |||| || || ||||||||||||||| ||   ||||| || | |||||||||||||| | ||||||||| |    
T  13454602 agatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctc 13454701  T
Q  250 ttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgac 332  Q
     ||||| ||||||| ||  ||||  | |  |||| ||||||||| ||| ||| |||| |||| | |||||| |||||||||||    
T  13454702 ctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgac 13454784  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 12641895 - 12641795
Alignment:
Q  147 atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat 246  Q
    |||||| || || ||||||| ||  |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  ||||||||||    
T  12641895 atgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaat 12641796  T
Q  247 c 247  Q
    |    
T  12641795 c 12641795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 3417934 - 3417744
Alignment:
Q  154 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 253  Q
    ||||||||||||| ||| ||  ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||    
T  3417934 gaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctca 3417835  T
Q  254 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 344  Q
       ||||||| || | ||| || |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| |||||    
T  3417834 ttgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaat 3417744  T

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