View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2565_high_4 (Length: 269)
Name: NF2565_high_4
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2565_high_4 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 29323561 - 29323390
Alignment:
| Q |
88 |
ttcttagtaagtcataaatcaccacttccataccattttcttaccaaatcaaagacatgtagatgctaaaaccaatccatttcaacttttcgattctcat |
187 |
Q |
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| T |
29323561 |
ttctcagtaagtcataaatctccattgccataccattttcttactaaatcaaagacatgtagatgctaaaaccaatccatttcaacttttcgattctcat |
29323462 |
T |
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| Q |
188 |
tatagcaatatttacaagtgatttcatgggtcttatcatcacaatacctcactaaatccattcaaccctttg |
259 |
Q |
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| T |
29323461 |
tatagcaatatttagaagtgatttcatgggtcttatcatcacaatacctcactaaatccattcaaccttttg |
29323390 |
T |
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Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 29134672 - 29134855
Alignment:
| Q |
73 |
taaagttcatccttattctta--gtaagtcataaatcaccacttccataccattttcttaccaaatcaaagacatgtagatgctaaaaccaatccatttc |
170 |
Q |
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| T |
29134672 |
taaagttcatcgttattctcacagtaagtcataaatttccacttccatacccttttcttactaaatcaaagacatgtagatgctaaaactcatccatttc |
29134771 |
T |
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| Q |
171 |
aacttttcgattctcattatagcaatatttacaagtgatttcatgggtcttatcatcacaatacctcactaaatccattcaacc |
254 |
Q |
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| T |
29134772 |
aatttttcgattctcattataacaatatttagaactgatttcatgggtattatcatcacaatccctcactaaatccattcaacc |
29134855 |
T |
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Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 96 - 254
Target Start/End: Original strand, 28001164 - 28001322
Alignment:
| Q |
96 |
aagtcataaatcaccacttccataccattttcttaccaaatcaaagacatgtagatgctaaaaccaatccatttcaacttttcgattctcattatagcaa |
195 |
Q |
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||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||||| || ||| |
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| T |
28001164 |
aagtcataaatttccacttccatacccttttcttactaaatcaaagacatgtagatgctaaaactcatccattttaatttttcgattctcattttaacaa |
28001263 |
T |
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| Q |
196 |
tatttacaagtgatttcatgggtcttatcatcacaatacctcactaaatccattcaacc |
254 |
Q |
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| T |
28001264 |
tatttagaactgatttcatgggtattatcatcacaatccctcactaaatccattcaacc |
28001322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 28001104 - 28001167
Alignment:
| Q |
15 |
aaaacaccaacttctttagagcaccattttgatccaagacatatgctacatgccttcgtaaagt |
78 |
Q |
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| T |
28001104 |
aaaacaccaatttctttaaagcgccattttgatccaaggcatatgcaacccgccttcgtaaagt |
28001167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 267591 - 267525
Alignment:
| Q |
188 |
tatagcaatatttacaagtgatttcatgggtcttatcatcacaatacctcactaaatccattcaacc |
254 |
Q |
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| T |
267591 |
tataacaatatttagaactgatttcatgggtattatcatcacaatccctcactaaatccattcaacc |
267525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 43469193 - 43469152
Alignment:
| Q |
211 |
tcatgggtcttatcatcacaatacctcactaaatccattcaa |
252 |
Q |
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| T |
43469193 |
tcatgggtattatcatcacaatcactcactaaatccattcaa |
43469152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 10645698 - 10645658
Alignment:
| Q |
212 |
catgggtcttatcatcacaatacctcactaaatccattcaa |
252 |
Q |
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| T |
10645698 |
catgggtattatcatcacaatcactcactaaatccattcaa |
10645658 |
T |
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